HsaALTA0009900-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000227124 | ZNF717
Description
zinc finger protein 717 [Source:HGNC Symbol;Acc:29448]
Coordinates
chr3:75790761-75832515:-
Coord C1 exon
chr3:75832457-75832515
Coord A exon
chr3:75790888-75791016
Coord C2 exon
chr3:75790761-75790887
Length
129 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GGAAAAATGTGCCATTACAGGGG
3' ss Score
2.77
Exon sequences
Seq C1 exon
CTATGTTTCCAGTGTTCTCTGGCTGTTTCCAAGAGCTACAAGAAAAGAATAAATCTCTG
Seq A exon
GGGTTGGTGTCCTTTGAAGATGTGGCTGTGCACTTCACCTGGGAGGAGTGGCAGGACGTGGATGATGCTTAGAGGACCCTGTACAGGAACGTGATGCTGGAGACCTACAACAGCCTGGTATCATTACAG
Seq C2 exon
GAGTTGGTGTCCTTTGAGGAGGTAGCTGTGCACTTCACCTGGGAGGAGTGGCAGGACCTGGATGATGCTCAGAGGACCCTGTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGGTATCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227124-3-6,3-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGTTCTCTGGCTGTTTCC
R:
CCAATGATACCAGGCTGCTGT
Band lengths:
178-307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)