MmuALTA1024308-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000032425 | Zfp949
Description
zinc finger protein 949 [Source:MGI Symbol;Acc:MGI:1918890]
Coordinates
chr9:88554376-88567285:+
Coord C1 exon
chr9:88554376-88554544
Coord A exon
chr9:88567159-88567161
Coord C2 exon
chr9:88567162-88567285
Length
3 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
GGAGAAATGTGCTGTTACAGGAG
3' ss Score
2.66
Exon sequences
Seq C1 exon
CTAATTGCACAGTGTTTTGAGTGGAGAATCTAGGACCAAGCCATGAATATCCTCTCACTCTCATGATTATACGATTCTCCTTCTTTCGAGTGTATCCCAGTATCCTCTGCGTGTTTCCAGGGGCAAAACCAAAACCAAGCAACTTACAAACATCATGAATGAATATGTG
Seq A exon
GAG
Seq C2 exon
TTGGTGTCTTTTGAGGACGTCACTGTGAAGTTCACCTGGGAGGAGTGGCAGAATCTCAACGACGCTCAGAAGATGCTGTACAGGAGTGTGATGCTGGAGACATATAATAGCCTGCTGTCACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032425-10-15,10-14-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=93.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCAGGGGCAAAACCAA
R:
CCACTCCTCCCAGGTGAACTT
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types