HsaALTA0009900-2/3 @ hg38
Alternative 3'ss
Gene
ENSG00000227124 | ZNF717
Description
zinc finger protein 717 [Source:HGNC Symbol;Acc:HGNC:29448]
Coordinates
chr3:75741610-75783364:-
Coord C1 exon
chr3:75783306-75783364
Coord A exon
chr3:75741665-75741736
Coord C2 exon
chr3:75741610-75741664
Length
72 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
ACAGCCTGGTATCATTACAGGAG
3' ss Score
5.39
Exon sequences
Seq C1 exon
CTATGTTTCCAGTGTTCTCTGGCTGTTTCCAAGAGCTACAAGAAAAGAATAAATCTCTG
Seq A exon
GAGTTGGTGTCCTTTGAGGAGGTAGCTGTGCACTTCACCTGGGAGGAGTGGCAGGACCTGGATGATGCTCAG
Seq C2 exon
AGGACCCTGTACAGGGACGTGATGCTGGAGACCTACAGCAGCCTGGTATCATTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227124-5-16,5-15,5-14-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGTTCTCTGGCTGTTTCCA
R:
CCAATGATACCAGGCTGCTGT
Band lengths:
105-177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains