HsaALTA0009901-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000182903 | ZNF721
Description
zinc finger protein 721 [Source:HGNC Symbol;Acc:29425]
Coordinates
chr4:420662-429668:-
Coord C1 exon
chr4:429559-429668
Coord A exon
chr4:420763-420908
Coord C2 exon
chr4:420662-420762
Length
146 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ACCTTCCTTTACTTTCCTAGGAT
3' ss Score
10.55
Exon sequences
Seq C1 exon
GTTTGACTTGCAGTATCCAGAGGAAATGTGGAGAAACACAGTTGTACAGAAGGGAAGAAAATAGGTTGATACTCCTGTTGCAGGACCATTTGAAGTCTGAGAGTTTCCAG
Seq A exon
GATATGTCGTTATTGATCCAGCTCAACTTTATGTATATGAGAAACTTGGACAGTCTGGACAATAGAATAAATGAAGTCAATAAAACCATTCTTTTAACAAACTTAATACCATACCTTCAGAGTGTTATTTTCCTTTTTGTCATAAG
Seq C2 exon
GTGTCTGGAAATGAAGTATGGAAATGAAATCATGAATAAAGACCCAGTTTTCAGAATCTCTCCACGAAGTAGAGGAACTCATACCAATCCAGAAGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182903-14-16,14-15-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGACTTGCAGTATCCAGAGGA
R:
AGGCTCTTCTGGATTGGTATGAGT
Band lengths:
210-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)