HsaEX0074266 @ hg19
Exon Skipping
Gene
ENSG00000182903 | ZNF721
Description
zinc finger protein 721 [Source:HGNC Symbol;Acc:29425]
Coordinates
chr4:419224-431300:-
Coord C1 exon
chr4:431235-431300
Coord A exon
chr4:429559-429668
Coord C2 exon
chr4:419224-420762
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCCATGTTTTCCCAGGTT
3' ss Score
9.79
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGGAAGGAACAGAGCCACAGAGAAAAATGACTTGCTCACAACAGAAGAGCCAGTAGTAAAACACAG
Seq A exon
GTTTGACTTGCAGTATCCAGAGGAAATGTGGAGAAACACAGTTGTACAGAAGGGAAGAAAATAGGTTGATACTCCTGTTGCAGGACCATTTGAAGTCTGAGAGTTTCCAG
Seq C2 exon
GTGTCTGGAAATGAAGTATGGAAATGAAATCATGAATAAAGACCCAGTTTTCAGAATCTCTCCACGAAGTAGAGGAACTCATACCAATCCAGAAGAGCCTGAAGAAGATGTTCAAGCTGAAAGAGTCCAAGCAGCAAATGCACTCACTACTCCAAACTTGGAGGAGGAACCAGTCATAACTGCAAGCTGTTTACACAAGGAATATTATGAGACAAAGAAAGTTGCTTTTCAACAACAAAGAAGAAAGCAGCCATCAGAAATGTTTCGTTTTGTGTTAAAAAGTGAAGTTTTGGGATTACTAGGACACAATGGAGCTGGCAAAAGTACTTCCATTAAAATGATAACTGGGTGCACAGTGCCAACTGCAGGAGTGGTGGTGTTACAAGGCAACAGAGCATCAGTAAGGCAACAGCGTGACAACAGCCTCAAGTTCTTGGGTACTGCCCTCAGGAGAACTCACTGTGTCCCAAACTTACAATGAAAGAGCATTTGGAGTTGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182903-'12-16,'12-14,14-16
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.555 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGGAACAGAGCCACAGA
R:
TGACTGGTTCCTCCTCCAAGT
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)