HsaALTA0009911-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000169951 | ZNF764
Description
zinc finger protein 764 [Source:HGNC Symbol;Acc:28200]
Coordinates
chr16:30567328-30569167:-
Coord C1 exon
chr16:30569054-30569167
Coord A exon
chr16:30567429-30567431
Coord C2 exon
chr16:30567328-30567428
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGAG
5' ss Score
2.57
3' ss Seq
CTCCCCTCTTTATCTCTCAGCAG
3' ss Score
8.38
Exon sequences
Seq C1 exon
GAATCGGAGGCAACAAGCCAGCTCTCATCTCCTGGGTGGAGGAGGAGGCCGAACTGTGGGGTCCGGCTGCCCAGGATCCGGAGGTGGCGAAATGTCAGACACAAACGGACCCAG
Seq A exon
CAG
Seq C2 exon
ATTCCAGAAACAAGAAAAAGGAAAGACAAAGGGAAGGGACGGGAGCCCTGGAGAAGCCCGACCCTGTGGCCGCCGGGTCTCCTGGGCTGAAGTCTCCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169951-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=NA C2=0.373
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGCGAAATGTCAGACAC
R:
CAGGGTCGGGCTTCTCCA
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)