HsaALTA0009911-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000169951 | ZNF764
Description
zinc finger protein 764 [Source:HGNC Symbol;Acc:HGNC:28200]
Coordinates
chr16:30556007-30557846:-
Coord C1 exon
chr16:30557733-30557846
Coord A exon
chr16:30556108-30556110
Coord C2 exon
chr16:30556007-30556107
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGAG
5' ss Score
2.57
3' ss Seq
CTCCCCTCTTTATCTCTCAGCAG
3' ss Score
8.38
Exon sequences
Seq C1 exon
GAATCGGAGGCAACAAGCCAGCTCTCATCTCCTGGGTGGAGGAGGAGGCCGAACTGTGGGGTCCGGCTGCCCAGGATCCGGAGGTGGCGAAATGTCAGACACAAACGGACCCAG
Seq A exon
CAG
Seq C2 exon
ATTCCAGAAACAAGAAAAAGGAAAGACAAAGGGAAGGGACGGGAGCCCTGGAGAAGCCCGACCCTGTGGCCGCCGGGTCTCCTGGGCTGAAGTCTCCCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169951-1-2,1-1-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=NA C2=0.373
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGCGAAATGTCAGACAC
R:
CAGGGTCGGGCTTCTCCA
Band lengths:
99-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development