HsaALTA0009929-2/2 @ hg19
Alternative 3'ss
Gene
ENSG00000178917 | ZNF852
Description
zinc finger protein 852 [Source:HGNC Symbol;Acc:27713]
Coordinates
chr3:44541068-44544160:-
Coord C1 exon
chr3:44544034-44544160
Coord A exon
chr3:44542127-44542129
Coord C2 exon
chr3:44541068-44542126
Length
3 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATG
5' ss Score
5.68
3' ss Seq
TGTCTTATTTTTTTTGGCAGCAG
3' ss Score
6.59
Exon sequences
Seq C1 exon
GATACTGTGGCGTATGAGGACCTGTCTGAGGACTATACTCAGAAGAAATGGAAAGGTCTCGCACTCAGTCAGAGAGCCCTGCACTGGAACATGATGCTGGAAAATGACCGTAGCATGGCTTCTTTGG
Seq A exon
CAG
Seq C2 exon
GTAGGAACATGATGGAGAGTTCAGAGCTGACTCCGAAGCAGGAAATTTTTAAAGGATCAGAGTCATCTAATAGCACATCAGGGGGACTCTTTGGGGTGGTTCCTGGGGGAACAGAGACTGGAGATGTTTGTGAAGATACCTTCAAAGAGTTAGAAGGACAACCCTCAAATGAAGAAGGGAGCAGACTAGAAAGTGATTTCTTGGAAATAATAGATGAGGATAAGAAAAAATCCACAAAAGACAGATATGAGGAATATAAGGAAGTTGAGGAACATCCACCTCTGTCTTCCAGTCCTGTTGAACATGAAGGAGTTTTAAAGGGACAGAAATCCTATCGATGTGATGAATGTGGCAAAGCTTTTTATTGGAGTTCGCACCTCATTGGTCATCGGAGAATCCACACTGGAGAGAAACCCTATGAGTGTAATGAGTGTGGGAAGACCTTCAGGCAAACCTCCCAGCTCATTGTTCATCTCAGAACCCACACAGGGGAAAAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178917-2-5,2-4-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=NA C2=0.202
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCACTGGAACATGATGCT
R:
ATTTCCTGCTTCGGAGTCAGC
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)