HsaEX0074463 @ hg19
Exon Skipping
Gene
ENSG00000178917 | ZNF852
Description
zinc finger protein 852 [Source:HGNC Symbol;Acc:27713]
Coordinates
chr3:44540966-44552128:-
Coord C1 exon
chr3:44551983-44552128
Coord A exon
chr3:44544034-44544160
Coord C2 exon
chr3:44540966-44542129
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATCGGAGCTTGTCATTCCAGGAT
3' ss Score
3.23
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
GCAACTGGGGAAGCTGGGAGGTAGGCGCGGGGCGGTCGGCTGCGGTGGCGGCGTTTGGATGATTGTCTCTCGGCGGCGGAGTCGGTGAGCGGCCCGGCGGGGCGCGGGGTGCGGAGCGGGGGCGGCTGTGCGTGCGAGAGTGGCAG
Seq A exon
GATACTGTGGCGTATGAGGACCTGTCTGAGGACTATACTCAGAAGAAATGGAAAGGTCTCGCACTCAGTCAGAGAGCCCTGCACTGGAACATGATGCTGGAAAATGACCGTAGCATGGCTTCTTTGG
Seq C2 exon
CAGGTAGGAACATGATGGAGAGTTCAGAGCTGACTCCGAAGCAGGAAATTTTTAAAGGATCAGAGTCATCTAATAGCACATCAGGGGGACTCTTTGGGGTGGTTCCTGGGGGAACAGAGACTGGAGATGTTTGTGAAGATACCTTCAAAGAGTTAGAAGGACAACCCTCAAATGAAGAAGGGAGCAGACTAGAAAGTGATTTCTTGGAAATAATAGATGAGGATAAGAAAAAATCCACAAAAGACAGATATGAGGAATATAAGGAAGTTGAGGAACATCCACCTCTGTCTTCCAGTCCTGTTGAACATGAAGGAGTTTTAAAGGGACAGAAATCCTATCGATGTGATGAATGTGGCAAAGCTTTTTATTGGAGTTCGCACCTCATTGGTCATCGGAGAATCCACACTGGAGAGAAACCCTATGAGTGTAATGAGTGTGGGAAGACCTTCAGGCAAACCTCCCAGCTCATTGTTCATCTCAGAACCCACACAGGGGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178917_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.326 C2=NA
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=95.3)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGAAGCTGGGAGGTAG
R:
CAGGAACCACCCCAAAGAGTC
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)