MmuEX0053058 @ mm10
Exon Skipping
Gene
ENSMUSG00000063488 | Zkscan7
Description
zinc finger with KRAB and SCAN domains 7 [Source:MGI Symbol;Acc:MGI:3040678]
Coordinates
chr9:122892318-122898618:+
Coord C1 exon
chr9:122892318-122892391
Coord A exon
chr9:122892685-122892778
Coord C2 exon
chr9:122894692-122898618
Length
94 bp
Sequences
Splice sites
3' ss Seq
ATAGAAGCTTATCGTTCCAGGAG
3' ss Score
1.62
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
ATCCTGCTTTTCCCAAAGTGGGGAACCCCAGAGCCCAGGCAGTGGCTACTGTGCTTAGGATGGCCAGGCCTCAG
Seq A exon
GAGACGGCAGTGAACAAGGACTATAAGCAAGAAAAGTGGAGTGTCCTGTGTGAGACGGAGGTGGTAAGAGATGAGCACGGCCTGGCCTCTCTGG
Seq C2 exon
GTAAGAACAGGATAGGAAGTTCTGAGTTCAGTCCAAAGCAGGACATTTCTAAAGGATCACATTCGCTTGACACATCCTCAGAGGGACTCTTTGGAGTGGCACTGGTGGAAAGAGCGTCTGGTGACATCTGTAAAGATCCTTTAGCACAGAGGGAAGAGCATCCCTCAGATGAAGAAGGCAGCGGACTAGAAAGTGATTTCTTGGAGAAGGAAGATAAAAATTCTACAGAAGACAGAAATGAGGAATGTAAAGATGTAGGGGTGCATCCAGAAATGCCCTCCAGTCCTGTTGAGCATCAGGGAGAAGCAAAGAGGCAGAAGTCCTATCAATGTGATGAGTGTGGCAAAGTTTTTAGCCAGAGCTCTCGCTTCCTTGGACATCAGAGAATCCACGTTGGAGAGAGACCCTTTGAATGTAACAAGTGTGGGAAGACCTTTCAACAGATATCTCAGCTAGTTGTTCACCTCAGAATACACACTCAGGAAAAACCTTATGAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063488-'7-10,'7-7,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.462 A=0.438 C2=0.254
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCTTTTCCCAAAGTGG
R:
CACCAGTGCCACTCCAAAGAG
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types