MmuINT0178664 @ mm10
Intron Retention
Gene
ENSMUSG00000063488 | Zkscan7
Description
zinc finger with KRAB and SCAN domains 7 [Source:MGI Symbol;Acc:MGI:3040678]
Coordinates
chr9:122892685-122898618:+
Coord C1 exon
chr9:122892685-122892778
Coord A exon
chr9:122892779-122894691
Coord C2 exon
chr9:122894692-122898618
Length
1913 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATG
5' ss Score
5.68
3' ss Seq
CTTATTTCTTTTGGCAACAGGTA
3' ss Score
7.57
Exon sequences
Seq C1 exon
GAGACGGCAGTGAACAAGGACTATAAGCAAGAAAAGTGGAGTGTCCTGTGTGAGACGGAGGTGGTAAGAGATGAGCACGGCCTGGCCTCTCTGG
Seq A exon
GTAATGGCTCCCAGTAACTAGCCGTCTGTCCTTTACATCACAGCCCAGCCCCTGTATTCCTTTGTTTTGATTTGTTTTAACTTTTTATTATTTGCAAGCATGAAGTAGATGTGTATAATGAACACCCCTGCACCCGTCACCCAGTTTAACAATAGTCATCATTTTCTTTATTTAATGGATGATCAACAGTAGGGAGCTATGGGTTTTCTCAGCCATAAGAAGGAGTCCCTTGGGTTCTGGGAGTAAAGGTCTCTGTGTTTGAGGGATTAGGAGAATGGGGACCCAGAACAGTCAGATTGGGTAGTGGGAAATGCTGGTCCTGGAGATCCAGCAGTCCACCAGGGCCAATGTGGCTGGACTGACCATGTGGCTAACGCAGCCGTATGCATGGACTGACCATCTGACTAACGGGGCCCGTACGCATGGACTGACCATGTGACTAACACGGCCGTATGCAGCATGTTTGTTCCCTGTGCTTTTCCACTGAAACTCTTTTGAATTCTGAAACTGTCCGTATCATAGCTTCTTCTCAGCTCTGACTGCACCGTGGCTTCCCCTGGCTCCATATGCATTCAGCTTTAGATCTTACTTGCAATCATGCCCTGTTTGGGGGTCAGGATCTCCCTAGAAAGAACTCTGACCAAGGCAGTGATTAGACTCTCCTCTGTGCTTTAGAAATCATTGGCCCAGGCCACAAAAGATGCTGATGACAAGCTACAGATAAGCTAGACTTGAGTCTTTCTGGTACCTGGCCCAGGTCTAATCGCCTGTCACCTCTTGAGGAATGTTCAGTTGTATAAGATTCCCTTTATAAGGCCTGAGCCCCCACCCTGTGACTGGCAAACTCAGGGCAGTAGCCAGCTTGGCAGAGGGTGGACATGAAGGTTACTAACCTAAGTATTGTATAGTTTCACTTGTTAAATACACACTGGGCTTGGCCTCTTTGCATCATGGTTTAAAAGGAGCCAGCATTTGGTATCTGTTGATAACCATGAGTGGCTGCTGCAGCTTTCCCCAGGTTTTGCATTTGAATCTCCAAAACTGTAGACCAGTGTTTAACTGTTTAATTTCTTTATCAAATTGCTTTTGAATTATTTTATTATTATTTAAGAGACAAGCTCACAAGGGCATACTTTAATTTGTACTTCAAATCACTGATGCTTCTTTTAGTTTTTATAGGATATAGACCTGCCTTTGCCCAGTCCAGTGTCCTAACTGCTGTTCCCTTCAACTGTTCTGAACCAGTATACATGCTCCATTGCCACGTCACATAGATCAGTCTGTGCTCATGTCATAATGTAACTCAGATCTGTCTGTGTTCACTTCACACCGTCACGTGAGAAAGTCTCACCCCTCACCCCCAGTTTTGCCTTCTTTATTTCTTGCCAACCTTTCCTCCCTCTCTCAACCGACTTAGCTCTGTCTGGCCTGGAGCTCTGTGTGGACAAGGCTGGCCTTGATCTCCCAGAGATCTACCTGGTTCTCCTCTCAAGAGCTGAGATTCAAAGCACCACCACACATGGCCTAACATCTTTTTGGAGACATGTGGAACTGTACAATGTCATGGTGGAGAAAAACTTAATTTAGCCATTCACTAAGAAGACAGTTTCACAATGGCTCCAGAAGATGATATAACACTGTGCTACACAATCTCGCTTCCAGTCTGTCTCCTACCTAGACTGCATTAGCTCAGGTTTCCTCTGTCCTTGCCTTTCCTCCCCATTCTCCTCTATGGACCATTGTTCCTCTGTGTTTTAATATCCCTGAAGAAGAAAGGGGACTATTTTTTTCTCTGCTTCTCAAATGTTGTCTCATTTCTTAGCAATATAATATGATCTTTTTTTTCAGCTACAAAGCAAATAAATACATGAATAGTAAAGAAGGTTTTTTTTTCTTATTTCTTTTGGCAACAG
Seq C2 exon
GTAAGAACAGGATAGGAAGTTCTGAGTTCAGTCCAAAGCAGGACATTTCTAAAGGATCACATTCGCTTGACACATCCTCAGAGGGACTCTTTGGAGTGGCACTGGTGGAAAGAGCGTCTGGTGACATCTGTAAAGATCCTTTAGCACAGAGGGAAGAGCATCCCTCAGATGAAGAAGGCAGCGGACTAGAAAGTGATTTCTTGGAGAAGGAAGATAAAAATTCTACAGAAGACAGAAATGAGGAATGTAAAGATGTAGGGGTGCATCCAGAAATGCCCTCCAGTCCTGTTGAGCATCAGGGAGAAGCAAAGAGGCAGAAGTCCTATCAATGTGATGAGTGTGGCAAAGTTTTTAGCCAGAGCTCTCGCTTCCTTGGACATCAGAGAATCCACGTTGGAGAGAGACCCTTTGAATGTAACAAGTGTGGGAAGACCTTTCAACAGATATCTCAGCTAGTTGTTCACCTCAGAATACACACTCAGGAAAAACCTTATGAATGTTGTGAGTCTGGGAAGACTTACTGTCACAGTTCCCACCTCATTCAACACCAGAGACTCCGTAATGGAGACAAGCCTTATAAAGGAAATGAATGTGTAAGAGCGTCCATTCAGAGTTCCCAGCTCCTGGTCCACAAGAGAACCCACACTGGAGAGAAACCTGATGAATCTGGCGAGGCATTCATTTGGAATAAAAGTCTTATTCAACATCAGGTCCTTCACATTAGTAAGAAGCTCTATGAGTGTAATGAGTGTGGGAAAGCCTTCTATACCAACAGAAATCTTATTGACCACCAGAGAATCCACACTGGGGAGAAGCCTTATGAATGTATTGAATGTGGCAAGTCCTTCAGTCGGAGTAAGTGTCTTACTCGACATCAGAGCCTCCACACTGGGGAAAAAACATACAAATGTAGTGAATGTGGGAAAGCCTTCCTTCAGAACTCTCAGCTCATTGACCACAAACGAGTTCATACTGGTGAAAAGCCTTTTGAATGTAGTGAATGTGGTAAGAAATTCAGTTTAGGTAAATGCCTTATTCGGCACCAGAGACTTCACACTGGAGAAAAGCCCTATAAATGCAGTGAGTGTGGAAAATCCTTCAACCAAAACTCTCACCTCATTATACACCAGAGAATTCACACTGGTGAAAAACCTTATGGATGTAATGAGTGTGGGAAGGTCTTTAGTTATAGTTCTAGCCTTATGGTTCATCAGAGAACCCATACTGGTGAAAAGCCCTATAAATGTAAAGATTGCATGAAAGCCTTTGGTGACAGTTCACAGCTTATTGTGCACCAGAGGGTTCACACTGGTGAGAAGCCTTATGAATGTGCTGAATGTGGGAAAGCCTTTAGTCAGCGGTCCACCTTTAATCACCACCAGCGAATTCACAATGTCGCGAAGCCCTCAAGTCGGCTTCAGGCAGTATCTTAAGGCATGGTTTCCTGAGACAAAATAAAGAATTCTGAGTTAATTTGTTTAGAAGAAGGAAGTCGGGCAGTGATCCCAGCATTTGAGAGGCAGAGGCAGGTATATCTCTGAGTTTGAGGCCAGTCTAGTGCACAGAGTGAGTTCTGGGACAGCCAAGGGTACACAGAGAAACCTTGTCTTGAAAAGCCCCCCCCCCATAGGATATTTATCTTATTCTCTTTCAAATGAGTGCTTTCTATCTGGTATTCGATCACAAAGGCAGGATAATAAGAACCATATATTTTATTTACTTCTAGCTTTTTCTTTTTTAAAACTATCTTAAAATATATCTCATTAAAAATATATCTCATTTTTAAACTTTGTGTTCCACAATTTGTGATTTTCAAGCACAGAGATAATACCTCCTCTACTTCATTCTAGCCTATGCATTTCCTCGTTTATTTAAAGACTGACTGTAAGACTCTCATCACTTTTACTTCTTGCCTACAGCTCTCTGCATTTACTTTGTCCCTGATACTTTTTATGTGGATAGATGTTTTGCCTACGTGTATGGACGAGGACCACTTAGGTGCCTTGTATCTACAGAAGAGGTCATCAGACTACAGCTGTCAGCCACCCTGTGATGGTGACATCCTGAGTCCTCTGGCAGAGCAGCCAGTGCTCTGAACTACTGAGCCATCTCTCTAAGCCCTCACATTTGTTTTTTTTTTTTTAATTTTTAATTTTAATTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACTAGGCTGGCCTCGAAATCAGAAATCCACCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGACGTGCGCCACCACGCCCGGCAACATTTGTTTTTTAAAGGTAGTCTAGTATTCAGCATATCACTTATGTCCCCTCCCCAGGGAAAAGAAATCCCTTTTAGTTATTAGTGTTTCTTCATAACCTTGAAGATCCATCTAATTTAAGGACTTTTAACTTTTTGTTTATTTTTAAATGGAGTGTATTTGTATATGTCTGTACCTGTGAGTGCACTGGTTCTAGAGGACAGGAGAGAACATTGGATCCCCTAGAGCTGACATGGGTACTGGGAATTGAACCTGGGTCCTCTGCAATAACCACTGAGCTATCTCTCCAGCCTCAGGACTTTTTTTCTTTACATGCTTTTAAACCTCTGTTGATCTTATTTAAATGTTTTGAGTTAGTTGGTGCTATATTGGTACAACTATTGAATTCCGTTGTAAGAATTTATACTTTAACACCAGCTTATAGGCTCATTGTGTGTTTATATTTTTCATAGATAGTTATATTGATTTCTAAGTAAGTTTTACTTCACCCAAATAATCCTTAAATTAGGGACATACTTTCCCCTCCCCCAAGCTTTTAAGGTTAGAGGTGTGTCTGCAGTGTCACATACCCTAAACCCACTAATATCGTCTTTATCTAATATAACTATTGGTTTATTATCTTTACAAAGCTAATTTTGTGTGTGTGTGTGTGTATGTGTGAAACAGAGACAGAGCATATTTTTGTAACTGTTCAGTTGTACAATCATGCCCCCTCTTAGATGTGCCTTGTGCTGTACACTGACTTGCTAAACACATTCTGGCTCTTCAGTGAACAGATTGAGACCACAGTCAGAATTTACTACAAATGCTTGTTGACTCATGGCTGCACCAGGGTTATGGACATATACTCCCATGAATTTCTGTGTGTATTCTGGAGATATGCATTCAGGTCCTTGTGCCAGATGGCAAGTACTCTGCTTACTGAGCCATCTCTCTAGGCCCAGCATACACACATTTTCATGAAATAATCTGAAAGAAAATGTGGGGAAACTTTCTATTCTAATATATAGTTATTGGCCCCTAAGGGTACCTATGATGTAGAAAAGCAGCCTTCATCTGGGTGGGGTGGCACATACCTGTAAACCTAGCATTTGGGAAGCAGAGACAGATCTTTGTGAGTCCAAGGTCAACTTGGACTACATAGCAAGTTCCACGCCAGCCATGTTTAATCACTGTCTTCAAAGGAGGTGGGAAGGTAGGTATGACTTAGGTATTTTTTTAAAGTTACATTTTATGTACATGTACAGGAATCCATGGAGATTACAAGACAGCTTGTGGGAGTTGGTTCTCTCAACCAAGTAGATCCTATAGATCAAAGTCTGAAGTTGGGTTGCCAGGCTTGGCAACAAGTGCCTTCACCTGCTGAGCCATATCACTGGTCTTCATTTAATATTTAAAAACTACCCACTCACATAGGGATATACTGTGGGACACACTATGACATACAACAGCTTTCTGTGATGAGATGTTTTCTCTGCTTTGTTGTTTGCGTGTATTGTGTTTTATTTTGGATGTGGGGGAGGTTGCAAGGGTGAAGGGTGGGTATGGGGACAGGGAAATGAGTAGGACTGAAGTGCATGATGTGAAACAACAAATCAATAAAACGTTTTTTAAAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063488:ENSMUST00000063980:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=NA C2=0.254
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTAAGAGATGAGCACGGC
R:
CTGCCTCTTTGCTTCTCCCTG
Band lengths:
351-2264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types