MmuALTA1044604-2/2 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000097322 | A530083I20Rik
Description
RIKEN cDNA A530083I20 gene [Source:MGI Symbol;Acc:MGI:3040711]
Coordinates
chr9:122886767-122902026:-
Coord C1 exon
chr9:122901915-122902026
Coord A exon
chr9:122887230-122887233
Coord C2 exon
chr9:122886767-122887229
Length
4 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TGTTTTGTTTTGTTTTTAAGACA
3' ss Score
7.78
Exon sequences
Seq C1 exon
TTAGGACACCACCAACAGACCAAGAATTACAGGAAAATACATGAGAGATTCCTTATAAGAACATGGACGAGTCAGGGGCAGCATCATCACTGGAAACCACACTCTAGCATGG
Seq A exon
ACAG
Seq C2 exon
ATGGAGTAATCTGTGAACTCTCCGAGAGTACACAAGAGCACAGGACACTTTCCTGCGGTCCTTACTGTGCCGAGTGCTAAGCGGCAGGTCTCGCTGCACGTCTAATCTGCGAGCTCGCGTGGGGCTCACTCCAGAGTCACGGTCCTGCCTCGGTAGCCGCTCACCTGGCCGCGTCTGCCCCGTGCAGCGCTGACGCACGGGAGCCAACAACTCGAGCCGACCCCAAGCCGAGCGACCACAACACGAGGACGACGCGGCTCCGCCTCGGGTAAGCACCCCGGCACCGCCCGCGTCGCGGCCCGAGTGCGGGCCGCACTTTCCACCGCGTCGCCACCGTCATGCGTGACGGCTCAACGGCCCCACACACCTCCAGGACACTAGGAAATGGCAACGACGGCGGGACGGGAAGCATGAGAGCATCACTTCCGGTACCTCCTGGATTCCGGAAGTCTTGGTTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000097322-3-6,3-5-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACATGGACGAGTCAGGGG
R:
TGTGCTCTTGTGTACTCTCGGA
Band lengths:
97-101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types