Special

MmuINT0178664 @ mm9

Intron Retention

Gene
ENSMUSG00000063488 | Zfp167
Description
zinc finger protein 167 [Source:MGI Symbol;Acc:MGI:3040678]
Coordinates
chr9:122801803-122805242:+
Coord C1 exon
chr9:122801803-122801896
Coord A exon
chr9:122801897-122803809
Coord C2 exon
chr9:122803810-122805242
Length
1913 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATG
5' ss Score
5.68
3' ss Seq
CTTATTTCTTTTGGCAACAGGTA
3' ss Score
7.57
Exon sequences
Seq C1 exon
GAGACGGCAGTGAACAAGGACTATAAGCAAGAAAAGTGGAGTGTCCTGTGTGAGACGGAGGTGGTAAGAGATGAGCACGGCCTGGCCTCTCTGG
Seq A exon
GTAATGGCTCCCAGTAACTAGCCGTCTGTCCTTTACATCACAGCCCAGCCCCTGTATTCCTTTGTTTTGATTTGTTTTAACTTTTTATTATTTGCAAGCATGAAGTAGATGTGTATAATGAACACCCCTGCACCCGTCACCCAGTTTAACAATAGTCATCATTTTCTTTATTTAATGGATGATCAACAGTAGGGAGCTATGGGTTTTCTCAGCCATAAGAAGGAGTCCCTTGGGTTCTGGGAGTAAAGGTCTCTGTGTTTGAGGGATTAGGAGAATGGGGACCCAGAACAGTCAGATTGGGTAGTGGGAAATGCTGGTCCTGGAGATCCAGCAGTCCACCAGGGCCAATGTGGCTGGACTGACCATGTGGCTAACGCAGCCGTATGCATGGACTGACCATCTGACTAACGGGGCCCGTACGCATGGACTGACCATGTGACTAACACGGCCGTATGCAGCATGTTTGTTCCCTGTGCTTTTCCACTGAAACTCTTTTGAATTCTGAAACTGTCCGTATCATAGCTTCTTCTCAGCTCTGACTGCACCGTGGCTTCCCCTGGCTCCATATGCATTCAGCTTTAGATCTTACTTGCAATCATGCCCTGTTTGGGGGTCAGGATCTCCCTAGAAAGAACTCTGACCAAGGCAGTGATTAGACTCTCCTCTGTGCTTTAGAAATCATTGGCCCAGGCCACAAAAGATGCTGATGACAAGCTACAGATAAGCTAGACTTGAGTCTTTCTGGTACCTGGCCCAGGTCTAATCGCCTGTCACCTCTTGAGGAATGTTCAGTTGTATAAGATTCCCTTTATAAGGCCTGAGCCCCCACCCTGTGACTGGCAAACTCAGGGCAGTAGCCAGCTTGGCAGAGGGTGGACATGAAGGTTACTAACCTAAGTATTGTATAGTTTCACTTGTTAAATACACACTGGGCTTGGCCTCTTTGCATCATGGTTTAAAAGGAGCCAGCATTTGGTATCTGTTGATAACCATGAGTGGCTGCTGCAGCTTTCCCCAGGTTTTGCATTTGAATCTCCAAAACTGTAGACCAGTGTTTAACTGTTTAATTTCTTTATCAAATTGCTTTTGAATTATTTTATTATTATTTAAGAGACAAGCTCACAAGGGCATACTTTAATTTGTACTTCAAATCACTGATGCTTCTTTTAGTTTTTATAGGATATAGACCTGCCTTTGCCCAGTCCAGTGTCCTAACTGCTGTTCCCTTCAACTGTTCTGAACCAGTATACATGCTCCATTGCCACGTCACATAGATCAGTCTGTGCTCATGTCATAATGTAACTCAGATCTGTCTGTGTTCACTTCACACCGTCACGTGAGAAAGTCTCACCCCTCACCCCCAGTTTTGCCTTCTTTATTTCTTGCCAACCTTTCCTCCCTCTCTCAACCGACTTAGCTCTGTCTGGCCTGGAGCTCTGTGTGGACAAGGCTGGCCTTGATCTCCCAGAGATCTACCTGGTTCTCCTCTCAAGAGCTGAGATTCAAAGCACCACCACACATGGCCTAACATCTTTTTGGAGACATGTGGAACTGTACAATGTCATGGTGGAGAAAAACTTAATTTAGCCATTCACTAAGAAGACAGTTTCACAATGGCTCCAGAAGATGATATAACACTGTGCTACACAATCTCGCTTCCAGTCTGTCTCCTACCTAGACTGCATTAGCTCAGGTTTCCTCTGTCCTTGCCTTTCCTCCCCATTCTCCTCTATGGACCATTGTTCCTCTGTGTTTTAATATCCCTGAAGAAGAAAGGGGACTATTTTTTTCTCTGCTTCTCAAATGTTGTCTCATTTCTTAGCAATATAATATGATCTTTTTTTTCAGCTACAAAGCAAATAAATACATGAATAGTAAAGAAGGTTTTTTTTTCTTATTTCTTTTGGCAACAG
Seq C2 exon
GTAAGAACAGGATAGGAAGTTCTGAGTTCAGTCCAAAGCAGGACATTTCTAAAGGATCACATTCGCTTGACACATCCTCAGAGGGACTCTTTGGAGTGGCACTGGTGGAAAGAGCGTCTGGTGACATCTGTAAAGATCCTTTAGCACAGAGGGAAGAGCATCCCTCAGATGAAGAAGGCAGCGGACTAGAAAGTGATTTCTTGGAGAAGGAAGATAAAAATTCTACAGAAGACAGAAATGAGGAATGTAAAGATGTAGGGGTGCATCCAGAAATGCCCTCCAGTCCTGTTGAGCATCAGGGAGAAGCAAAGAGGCAGAAGTCCTATCAATGTGATGAGTGTGGCAAAGTTTTTAGCCAGAGCTCTCGCTTCCTTGGACATCAGAGAATCCACGTTGGAGAGAGACCCTTTGAATGTAACAAGTGTGGGAAGACCTTTCAACAGATATCTCAGCTAGTTGTTCACCTCAGAATACACACTCAGGAAAAACCTTATGAATGTTGTGAGTCTGGGAAGACTTACTGTCACAGTTCCCACCTCATTCAACACCAGAGACTCCGTAATGGAGACAAGCCTTATAAAGGAAATGAATGTGTAAGAGCGTCCATTCAGAGTTCCCAGCTCCTGGTCCACAAGAGAACCCACACTGGAGAGAAACCTGATGAATCTGGCGAGGCATTCATTTGGAATAAAAGTCTTATTCAACATCAGGTCCTTCACATTAGTAAGAAGCTCTATGAGTGTAATGAGTGTGGGAAAGCCTTCTATACCAACAGAAATCTTATTGACCACCAGAGAATCCACACTGGGGAGAAGCCTTATGAATGTATTGAATGTGGCAAGTCCTTCAGTCGGAGTAAGTGTCTTACTCGACATCAGAGCCTCCACACTGGGGAAAAAACATACAAATGTAGTGAATGTGGGAAAGCCTTCCTTCAGAACTCTCAGCTCATTGACCACAAACGAGTTCATACTGGTGAAAAGCCTTTTGAATGTAGTGAATGTGGTAAGAAATTCAGTTTAGGTAAATGCCTTATTCGGCACCAGAGACTTCACACTGGAGAAAAGCCCTATAAATGCAGTGAGTGTGGAAAATCCTTCAACCAAAACTCTCACCTCATTATACACCAGAGAATTCACACTGGTGAAAAACCTTATGGATGTAATGAGTGTGGGAAGGTCTTTAGTTATAGTTCTAGCCTTATGGTTCATCAGAGAACCCATACTGGTGAAAAGCCCTATAAATGTAAAGATTGCATGAAAGCCTTTGGTGACAGTTCACAGCTTATTGTGCACCAGAGGGTTCACACTGGTGAGAAGCCTTATGAATGTGCTGAATGTGGGAAAGCCTTTAGTCAGCGGTCCACCTTTAATCACCACCAGCGAATTCACAATGTCGCGAAGCCCTCAAGTCGGCTTCAGGCAGTATCTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063488-Zfp167:NM_001177505:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact





	

	
Alternative protein isoforms





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.438 A=NA C2=0.254
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000071695





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr3:44568434-44569921 
ALTERNATIVE
HsaINT0186291
(ZKSCAN7)
Human
(hg19)
chr3:44609926-44611413 
ALTERNATIVE
HsaINT0186291
(ZNF167)
Rat
(rn6)
chr8:131940125-131947025 
ALTERNATIVE
RnoINT0169038
(Zkscan7)
Cow
(bosTau6)
chr22:16439253-16441059 
ALTERNATIVE
BtaINT0000677
([1])
Chicken
(galGal4)
chr18:30745-31363 
ALTERNATIVE
GgaINT1030521
(ZNF302)
Chicken
(galGal3)
chrUn_random:28965509-28965614 
LOW PSI
GgaINT0003356
([2])
Zebrafish
(danRer10)
chr4:74835821-74839675 
LOW PSI
DreINT0178595
(zgc:113209)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GTGGTAAGAGATGAGCACGGC

				
R: 
CTGCCTCTTTGCTTCTCCCTG

				
Band lengths: 
351-2264

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"