MmuALTD0016046-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000063488 | Zfp167
Description
zinc finger protein 167 [Source:MGI Symbol;Acc:MGI:3040678]
Coordinates
chr9:122801803-122805242:+
Coord C1 exon
chr9:122801803-122801865
Coord A exon
chr9:122801866-122801896
Coord C2 exon
chr9:122803810-122805242
Length
31 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATG
5' ss Score
5.68
3' ss Seq
CTTATTTCTTTTGGCAACAGGTA
3' ss Score
7.57
Exon sequences
Seq C1 exon
GAGACGGCAGTGAACAAGGACTATAAGCAAGAAAAGTGGAGTGTCCTGTGTGAGACGGAGGTG
Seq A exon
GTAAGAGATGAGCACGGCCTGGCCTCTCTGG
Seq C2 exon
GTAAGAACAGGATAGGAAGTTCTGAGTTCAGTCCAAAGCAGGACATTTCTAAAGGATCACATTCGCTTGACACATCCTCAGAGGGACTCTTTGGAGTGGCACTGGTGGAAAGAGCGTCTGGTGACATCTGTAAAGATCCTTTAGCACAGAGGGAAGAGCATCCCTCAGATGAAGAAGGCAGCGGACTAGAAAGTGATTTCTTGGAGAAGGAAGATAAAAATTCTACAGAAGACAGAAATGAGGAATGTAAAGATGTAGGGGTGCATCCAGAAATGCCCTCCAGTCCTGTTGAGCATCAGGGAGAAGCAAAGAGGCAGAAGTCCTATCAATGTGATGAGTGTGGCAAAGTTTTTAGCCAGAGCTCTCGCTTCCTTGGACATCAGAGAATCCACGTTGGAGAGAGACCCTTTGAATGTAACAAGTGTGGGAAGACCTTTCAACAGATATCTCAGCTAGTTGTTCACCTCAGAATACACACTCAGGAAAAACCTTATGAATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063488-3-4,4-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.438 A=NA C2=0.254
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAGTGTCCTGTGTGAGA
R:
CCTCTGAGGATGTGTCAAGCG
Band lengths:
113-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: