HsaINT0186291 @ hg38
Intron Retention
Gene
ENSG00000196345 | ZKSCAN7
Description
zinc finger with KRAB and SCAN domains 7 [Source:HGNC Symbol;Acc:HGNC:12955]
Coordinates
chr3:44568307-44572158:+
Coord C1 exon
chr3:44568307-44568433
Coord A exon
chr3:44568434-44569921
Coord C2 exon
chr3:44569922-44572158
Length
1488 bp
Sequences
Splice sites
5' ss Seq
TGGGTAATG
5' ss Score
5.68
3' ss Seq
TGTCTTCTTTCTTTGGGCAGCAG
3' ss Score
7.34
Exon sequences
Seq C1 exon
GATACTGTGGCATATGAGGACCTATCTGTAGACTACACTCAGAAGAAATGGAAAAGTCTCACACTCAGTCAGAGAGCCCTGCAGTGGAACATGATGCCAGAAAATCACCATAGCATGGCCTCCTTGG
Seq A exon
GTAATGATTCTGTTTCCTAGTCACTTAAAGTCTGCATGCTGCACAATCTCTTTTCTATATTCCTTGTCTCTTTAAACTTTTTACCATGAAAATTTCCAAACATAGTTAAACTAGAGTGAATAATATAGGGACCCTTTCTGCATTCATCACTGAGATTCAACAGTGATCAGCATACTCTTCACCTCATTATGAATTGATATAGTGTGGTTTAGGTAGGGCTTCTTAGTTGTAAGGAACAGAGAGCCACTCAAGTTATTGTAAGTAAGGAGCTGTGAGTCATAGGCTTAAAGGAATGAGAACCTGGAAGAAACTGATGAGCTAGACCAGACTGTGGGAAGCAGGGCCTTGACCCTGGGAGCCTGAGCTGCAAAAGCAAATGCATGTTGATGCCTGTGTTCCAGTGTGAATGTAATGCAGCTGCTCGCAGTGTATCTGTTTTCTCTCTGCTTGTCCTCCTCCTCTTGCCCATTTTCTTCACTGTGAATCTTTTGTCCTTTTCATAGCTCTTTTAATTTTACTTTCTGTTCTTTTACACTTGTTGCTTGCTGTGTTTCCTAATGGCTTGGCTTCTCTCCATGCGCCACTTCAGCTTCCATTGCTACTCGTAAGTGCCTTAATTTTGCCCTACCTCCAGTTCCAAATTTCCTCAGAGATGGACTTTCATTGCTATAGCCATTACGCATCATCTCATTTGGGCACAGGGGTTTGGCCCAGGCCACAGCAGAGGCTGAAGCCTAACCTACAAATAGACCCTTCAGTCTAGTACCTGGTGCCAGTCCAATCACCTGTGGCCCATCGTGGGATGCTCAGGGTCACTTGGCACCAAGCATGGTTGCCTAAGCATCCCTCTCTGCAAACACTGGGGCAGAACAGTTTCCTGAAAGGGCTTCTTGGAAGGGCAGATCCTGTGGTTGACGAGTTTAGGGCAGTCTTTTTACTGTCCTATCATGTAAGATCTGTTCTTTTTGTACACTTTCCTTATCATACCTCCATAATATAAATTTCCAGTCAATTCACTCTCATTTTTTTCCCTGTCTCTTTCTTATGTTTGGCTTGAGGTATTTGCCAGCCTCCTCTCTCCCAACATGTTTTCTGAGAACAATGGAACCATGCAATGTTATGGTTGGAAGGGATCTTAGAGTTCATCACTTTACTAAGGAGACATAGCACGAGAGTAACTTCTGTAAGATCACAGCATGCTTTGCAATCCACTTTTTTGCTTTCCAGTGGCCCTTCTGACTTGGTTGTGCTGGCTTAGTATCTTTTTTCCACCTGTTTTCACTGACCACCTTCCCCTTCCTTGTTTTCCTGTCCCTAGGGAAAAAAAATTGAGCTATTAATATTTCCCATTTTGCTCTTGTTCTCAATGTGTCATCTCATTTCTTAACCATAATGTGACTTTTTTTCAGGTATGTTAGCTCTTAATGATTCTCTTTCTTAAACAGGATAAGAAATGGGTAAAAGTTGTTGTCTTCTTTCTTTGGGCAG
Seq C2 exon
CAGGTGAGAACATGATGAAGGGTTCAGAGTTGACTCCAAAGCAGGAATTTTTTAAAGGATCAGAGTCATCTAACAGGACATCAGGGGGACTCTTTGGGGTGGTTCCTGGGGCAGCAGAGACTGGAGATGTTTGTGAAGATACTTTCAAGGAGTTAGAAGGACAAACCTCAGATGAAGAAGGGAGCAGACTAGAAAATGATTTCTTGGAAATAACAGATGAAGATAAGAAAAAATCCACAAAAGACAGATATGACAAATATAAGGAAGTTGGGGAACATCCACCTCTGTCTTCCAGTCCTGTTGAACATGAAGGAGTTTTAAAGGGACAGAAATCCTATCGATGTGATGAATGTGGCAAAGCTTTCAATCGGAGTTCTCACCTTATTGGCCATCAGAGAATCCACACTGGAGAGAAACCCTATGAGTGTAATGAGTGTGGGAAGACCTTCAGGCAAACCTCCCAGCTCATTGTTCATCTCAGAACCCACACAGGGGAAAAACCCTATGAATGCAGTGAGTGTGGAAAGGCCTATAGGCACAGCTCCCATCTCATTCAACACCAGAGACTCCATAATGGGGAGAAACCCTATAAATGTAATGAATGTGCAAAAGCCTTTACTCAGAGTTCCCGACTCACTGACCACCAGAGAACCCATACTGGGGAGAAACCTTATGAATGCAATGAGTGTGGAGAGGCATTCATTCGAAGCAAAAGTCTTGCTCGACATCAGGTCCTGCACACTGGTAAGAAACCTTACAAATGCAATGAGTGTGGGAGAGCATTCTGTTCCAATAGAAATCTCATTGACCATCAGAGAATCCACACTGGGGAGAAGCCTTATGAGTGTAGTGAATGTGGCAAAGCCTTCAGTCGGAGTAAATGTCTTATTCGACATCAGAGCCTCCATACTGGGGAAAAGCCATACAAATGTAGTGAATGTGGGAAAGCCTTCAATCAGAACTCTCAACTCATTGAGCATGAGCGAATTCATACTGGAGAAAAACCTTTTGAATGTAGCGAGTGTGGTAAGGCATTTGGTCTGAGTAAATGTCTTATTCGGCACCAGAGACTTCACACGGGTGAAAAGCCCTATAAATGCAATGAGTGTGGAAAATCCTTCAATCAAAACTCACACCTTATTATACACCAGAGAATTCACACTGGTGAGAAACCCTATGAATGTAATGAGTGTGGGAAGGTATTCAGTTATAGCTCCAGCCTTATGGTACATCAGAGAACCCATACTGGGGAAAAACCCTATAAATGCAATGATTGTGGGAAAGCTTTTAGTGACAGCTCACAGCTTATTGTACACCAGAGAGTCCACACCGGAGAGAAACCTTATGAATGTAGTGAATGTGGGAAAGCCTTTAGTCAGCGTTCCACTTTTAATCACCACCAGCGAACTCACACTGGAGAGAAGTCCTCAGGTCTGGCTTGGTCAGTTTCTTAAGGTATGGTTCTCTGAGACAGAGAGCAACGACCTTTGAGTTAAGCTGTCTTTATAAGCAGGATGCTCATAGTGGTTTCCCGGAGCCAGTAGTCACGGTGGACCATTCCCTACTTGCTTTTCCTTGGATCACTAAGGTGGGAGAGTAGGAGTAACTTATTCCAGTTCTTACCCATTATTAGGAAGGTAAGGACTACACATGTCATTGAATTGTAGGTTTCCTTTTTTTTTCTTTACTTTTAAATTTTAACTTTTAAAATCTATTTCATTTCTTAGTTATGCATCTCATAATCAGACTCCATGCTTTTTAAAGACAGAGATAATATCTTCTCTATTCTATTCTACTTCCTCCATTTCACCATTTATACAAAGTCATTCAAAAAGGCTGATTCATGCCTTCCTGCCTCTTGGCTATGGCCCTCCCCATCTACTCTTTAAACTTTAATCTATAACTTTTCATCAGTTTTGTTCCCTATCTAGAAAACATTTTCTTCTGTTTGCTAATCTTTGTCCCTCACAATTTTTGAAATCCATCTCATCACTGAAATACTTTCTTCTTCAAGTACTTTTTTATTTTTCTTCAACTTCTCTTGATTTGACCTCAGTGCTTTGAATTCACTGGTGCTACAATATGTAACTGTGGTTAATTGCCTTGTAAATTTTGCGTGTCTGTATACTTTTATACCAACTTATTGTAGGCTCTTTGAGGTCAGGTATGTATTTCTTTCCCATATAGATAGTATTTTGTACATACCAGTTGTTAAATAAATAATTTTTAAAATCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196345:ENST00000273320:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.254
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
NA
C2:
PF0135222=KRAB=PD(0.1=0.0),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=4.9),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGCAGTGGAACATGATG
R:
AGACAGAGGTGGATGTTCCCC
Band lengths:
342-1830
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains