HsaEX1035024 @ hg38
Exon Skipping
Gene
ENSG00000236869 | RP11-944L7.4
Description
NA
Coordinates
chr3:44557357-44685653:-
Coord C1 exon
chr3:44685559-44685653
Coord A exon
chr3:44661262-44661386
Coord C2 exon
chr3:44557357-44557592
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTGTCTCCCCTACAGGTC
3' ss Score
13.15
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
TTGGGTACTGAAGCTCGCGAGAGGATCCTGGGGGCAGGCGCGTCGCGGTGGCAGTGTTTCTTGGGTGTGCGGGGCCGGGCGCCCCGTAGCCTCTG
Seq A exon
GTCTGCATGGGGATTACAGGTGTTTGGCAAGTGGCATGGCAGAACAGAGAATCTAGATTCAGGACCTGGACTTGGATATAAGCTGTCACTTGTTACTTGGCCTTGCACTAAATGACCATTCTCAG
Seq C2 exon
GACAAGTTCAGCAACCCTAAAGGCAAACTGGCCTAGGGCCTGGGAAGTGGAGAATGCCTATTCCTAGGCTAACCCAAGCATTAGAGAAGCATCAGGCCGCCATTCTAGACTCAACTGCTCACCTCCTCTGATCCACTGAGGTGTCTCTGGAAATCCTCCACCACAGCCACAGCCTCCTCACCACTCTCAGGGTGATGCAGCTGCACCCAGGTCCGGAGCTCCCCAGGGAGGATGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236869-'0-13,'0-6,1-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGTGTTTCTTGGGTGTG
R:
ATCACCCTGAGAGTGGTGAGG
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains