HsaINT0186401 @ hg38
Intron Retention
Gene
ENSG00000186448 | ZNF197
Description
zinc finger protein 197 [Source:HGNC Symbol;Acc:HGNC:12988]
Coordinates
chr3:44632105-44632599:+
Coord C1 exon
chr3:44632105-44632196
Coord A exon
chr3:44632197-44632472
Coord C2 exon
chr3:44632473-44632599
Length
276 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
ACACACACTTGTTATTTCAGGAG
3' ss Score
6
Exon sequences
Seq C1 exon
ATTCTCCTGCCCCTGAAGCTTCTGCCCTTTCCCAGGAAGAGAACCCAAGAAATCAATTAATGGCACTTATGCTCCTAACAGCCCAGCCCCAG
Seq A exon
GTAAGGTTTGCATCCTCTTTCCTTCCCATCTGCACAGCGTAACTGTGGCTGAAGTGCCCTCTCTCATCCTTGTGCTTCAATGTCCAGTCAGTTCCCATTTCTAAATCAGGGTCTATGCTATTGGAAGACAGACTTTACATGTGATCTCCTTATGTCTCCCTGATGTCTGTTATGCACTCATGGCCTCACAGTGTATCCCTTCCCCAGAAGTGAAGGGAACCTTTCGACAGGCAAGTTCCTGGGCATTGGTAATCTCACACACACTTGTTATTTCAG
Seq C2 exon
GAGTTGGTGATGTTCGAGGAGGTGTCAGTATGCTTCACTTCAGAGGAATGGGCATGTCTGGGCCCAATCCAGAGGGCCTTGTACTGGGATGTGATGCTGGAGAATTATGGAAATGTGACCTCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000186448:ENST00000396058:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCCTGCCCCTGAAGCTT
R:
GGTCACATTTCCATAATTCTCCAGC
Band lengths:
212-488
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains