BtaINT0007152 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr22:16477234-16477733:+
Coord C1 exon
chr22:16477234-16477325
Coord A exon
chr22:16477326-16477606
Coord C2 exon
chr22:16477607-16477733
Length
281 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ACACATACCTGTCGTTTCAGGAA
3' ss Score
7.96
Exon sequences
Seq C1 exon
ATTCTCCTGCCCCTGAAGCTTCTGCCCTTTCCCAGGAAGAGAACCCCAGAAACCAATTAATGGCTCTCATGCTCTTGACAGCCCAGCCCCAG
Seq A exon
GTAAGATTTGCTACCTCTTTTCTTCCTAAGGCCCTATCTGCACTACCTAATTGTGGCTCAAATGTACACTCGCTCATCCTAGTGCTTGGGTGTCCAGTCGGCTCCCATCTTTGAATCAAGGTCCCTGCTATTAAAGGGCAGAGTTCATGTGGGATCTCCTGTGTCTCTCTGATATCCCACCTCATACCCTCATAACATGTCTCGTCCCCAAAAGTGGAAGGAACCCTTCAGTAGAGGAGCTTCCTGGGCATGGATAATCTCACACATACCTGTCGTTTCAG
Seq C2 exon
GAATTGGTGATGTTTGAGGAGGTATCAGTATGCTTCACTTCAGAAGAATGGGCATGTTTGAGCCCAGTTCAGAGGGCCTTGTACTGGGATGTTATGCTGGAGAATTATGGAAATGTGACTTCCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037803:ENSBTAT00000055475:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.516 A=NA C2=0.023
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCCTGCCCCTGAAGCTT
R:
AGTCACATTTCCATAATTCTCCAGCA
Band lengths:
212-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]