HsaEX0073097 @ hg38
Exon Skipping
Gene
ENSG00000196345 | ZKSCAN7
Description
zinc finger with KRAB and SCAN domains 7 [Source:HGNC Symbol;Acc:HGNC:12955]
Coordinates
chr3:44556930-44568003:+
Coord C1 exon
chr3:44556930-44557470
Coord A exon
chr3:44565487-44565655
Coord C2 exon
chr3:44567912-44568003
Length
169 bp
Sequences
Splice sites
3' ss Seq
TTGTATTTCCCTCTCTCTAGGTT
3' ss Score
12.39
5' ss Seq
TCGGTACTT
5' ss Score
5.17
Exon sequences
Seq C1 exon
TTCCTGAGACCTGAACTATTGACCATCATTTTAATCGGACCAACTGCAGCTGTAACAAGCTTCTCTTTGGGGTCACAATGACCACTGCAGGCAGGGGAAATTTAGGCCTCATCCCCAGGAGCACTGCTTTCCAGAAGCAAGAGGGGCGCCTGACTGTGAAGCAGGAGCCAGCAAACCAGACCTGGGGGCAGGGCAGCAGTCTCCAGAAGAACTATCCTCCTGTCTGCGAAATCTTCCGGCTACACTTCAGGCAATTGTGTTACCACGAGATGTCTGGGCCGCAGGAAGCATTGAGCCGGCTTCGGGAGCTCTGCCGCTGGTGGCTCATGCCAGAGGTGCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTTGAGCAGTTCCTGAGCATCCTCCCTGGGGAGCTCCGGACCTGGGTGCAGCTGCATCACCCTGAGAGTGGTGAGGAGGCTGTGGCTGTGGTGGAGGATTTCCAGAGACACCTCAGTGGATCAGAGGAG
Seq A exon
GTTTCAGCCCCAGCACAGAAACAGGAAATGCATTTTGAGGAGACAACAGCTCTGGGTACAACAAAGGAATCTCCTCCTACCTCACCCCTCAGTGGGGGCTCAGCCCCTGGAGCCCACCTGGAGCCTCCTTATGACCCAGGGACACACCACCTCCCCAGTGGGGACTTCG
Seq C2 exon
CTCAATGTACTTCTCCAGTTCCTACCCTTCCTCAAGTGGGGAACTCAGGAGACCAAGCAGGGGCAACTGTACTTCGGATGGTCAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196345-'2-7,'2-4,3-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.190 A=0.990 C2=0.972
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.9=66.0)
A:
PF0202312=SCAN=PD(1.0=1.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACACCAAGGAGCAGATC
R:
CATCCGAAGTACAGTTGCCCC
Band lengths:
245-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development