HsaINT0186288 @ hg38
Intron Retention
Gene
ENSG00000196345 | ZKSCAN7
Description
zinc finger with KRAB and SCAN domains 7 [Source:HGNC Symbol;Acc:HGNC:12955]
Coordinates
chr3:44556930-44565655:+
Coord C1 exon
chr3:44556930-44557470
Coord A exon
chr3:44557471-44565486
Coord C2 exon
chr3:44565487-44565655
Length
8016 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTGTATTTCCCTCTCTCTAGGTT
3' ss Score
12.39
Exon sequences
Seq C1 exon
GCCACACTACCATCACCCCTTTCTCCAACCCTGAAAAACAGTTCCTGAGACCTGAACTATTGACCATCATTTTAATCGGACCAACTGCAGCTGTAACAAGCTTCTCTTTGGGGTCACAATGACCACTGCAGGCAGGGGAAATTTAGGCCTCATCCCCAGGAGCACTGCTTTCCAGAAGCAAGAGGGGCGCCTGACTGTGAAGCAGGAGCCAGCAAACCAGACCTGGGGGCAGGGCAGCAGTCTCCAGAAGAACTATCCTCCTGTCTGCGAAATCTTCCGGCTACACTTCAGGCAATTGTGTTACCACGAGATGTCTGGGCCGCAGGAAGCATTGAGCCGGCTTCGGGAGCTCTGCCGCTGGTGGCTCATGCCAGAGGTGCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTTGAGCAGTTCCTGAGCATCCTCCCTGGGGAGCTCCGGACCTGGGTGCAGCTGCATCACCCTGAGAGTGGTGAGGAGGCTGTGGCTGTGGTGGAGGATTTCCAGAGACACCTCAGTGGATCAGAGGAG
Seq A exon
GTGAGCAGTTGAGTCTAGAATGGCGGCCTGATGCTTCTCTAATGCTTGGGTTAGCCTAGGAATAGGCATTCTCCACTTCCCAGGCCCTAGGCCAGTTTGCCTTTAGGGTTGCTGAACTTGTCCTGTGGATAGAGGGAAAATAGTTTTGTGCTCCAAGCCATAAACACAAGTGCACATCCCAGCTAAGCTCTGTGATTCACCCTGTGAAATACTGTGTTCTGAGCCTAGCTTCATCCTGGAGATTCGCATGGTACTCCTGGCAGGCGGGGGATCTGCATGCTGGTTAGAATAGGGCGATCGGGGGAAGGCGGGCCTTTGGGTATGCTGATAATACGAGCCTTCATTTGAGACATTCTCTTTGCTCACTTCCTTGGACTTCTCAGAGTCAATTTTCTCTTTTTCTGCCTCTTTGATTCCCTGAAAGGTGACATTTTTGGGCCTTGTAATTATTTGTTCCTTTTGCTAGCTCTCCAAACCTAACTGGGATCTTTTTGCATCTTTAATTCTAATTTAAGTTTTCCCTATTTCCTGGAGTTCTTGCAAATGTAATACCAAGGTAATTTAAACTAGAGGAATAGTTGGGAAGAGTGAGCAGTAAGACACATTGGAAAATCTGGTTTCTAGGACCATAGAGCCAACTAGCTCTGTGCCCATGTGTTTCAGTCAGGGTTTAGCCAGAGAGGTAGAATCAGTAGGAGAGAGGGGTGTGTGTGTGTGTGTGTGTGTGGGCATGGGCACACATGCATGTGCATGTGTAAAGAGATTTATTGGTGGCTGGGCATGGTAGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAAGGGGGTGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGCAAAGCCCCATTGCTACTAAAAATACAAAAATTTGCTAGGTAGGGTGGCATATACCTGTAATCTTAGCTACTGGGGAGGCTGAGGCAAAAGAATCACTTGAACCCAGGAGGCAGAGGTTGCAGTAAGCCAAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGCGAGACTTCATCTCAAAAAAAAAAAAAAAGAAAAGAAAGAGAGATTTATTGCTAGTAAGTGGCTTACGTAATTGTGAGGCTGACTAGGCAAGTCTGAAACCCATAGGCAGGCCATCGACAAGGGCAGCCCAAAACAGTGGCACAAGCTGAAGCTGCAGTGCACAGGTGGAATTTCTTCTTTCTTCTTTGTCCTTTCTTCTTTTTCCTCCTCCTCCTCCTTTTATTCTCTTTCTTCTTCTTTCTTCCTCGTCTGCTTTCTCCTTTCTTCTTCATTTTTTTTTTTTTTTTTTTTTGGGTCTTGCTCTGTTGCCTAGGCCAGAATGCAGTGGCATGAACATGGCTCACTGCAAGCTCAGCCTCCTGGCTCAAGTGATCCTCCCACCTTAGCCTCCTGAGTAGCTGGTACCACAGTCATGTGCCACCACACCAGGCTAATTTTTTTTATTGTAGACATGTGGTCTTGTTATGTTGCCCAGGCTTGTTCTTGAATTCCTGGCTTCAGATGATATTCTTGCCTTGGCCTCCCAAAGCACTGCGATTACAGGCATGAGCTACCACGCCTGGCCTGGAATTTCTTCTTCATGGAACTTTTAGCTTTGCTTTTAAGGGCTTACAACTGATTGAATCAGGCTCATGCATTCATCCGTTATCTAGTATAATCTCCCTTACTTAAACTTATTATGTACTTTAATCACATTTTTAAAATAGTTTACAGCAACACCTGGATTGATGTTTGATTAGTACCAAGTTGACACATCAAAAGATCATCACACCATGGATAAGTTAGTTCTTCCTAATGAGTTTCAAATTGTTCCCCTATAATAGAAGCAGGGTGAACTAGAGGTCCCCTCTACCCCTTTGTACTTTATCAGGGGAAAACAGTATAGAGAATTTCCCAAGTACCCAATATATCATTTTATTCAATGCTTTTTTTCCTAGAGAGTCTCACCCTATCACCCAGGCTGGAGTGTGGTGGCACAATCTTGGTTCACTGCAACCTCTGCCTCCTGGGCTCAAGTGATCCTCCCACCTCAGCTTCCCTAGTAGCTGGGACCATAGGTGTGAGCCACCACACCTGGCTAATTTTTGTGTTTTTAGTAGAGACGGGGTTTCACCATGTTGTCCAGGGTGGTCTTGAACTCCTGAGCTCAAGAAAGCCACCTGCCTCATCCTCCCAAAGTGCTGGAATTACAGGTGTGAGCCATCACGCTCAGCCTATTCAATGCTTTTTAAAAAATGATTACATATCACTAGGGAATCAGTTCTAGTTGATCAGGATCCTGGGGCTAGACATTTTTCCAGGATTATTAGCAGTACACATTTGTCATTATCAACCATCATTTTCTTTGTGTAAACAAGTAAGCACATATGAGTAAATCAACCATCACAAGGGTCTAGAGAGCAGCTGGGCCAGCCATGGCAATGACAGGTGGCTGAAGACATATTTAGAGAACCATTTAGTGAGGGTGGCAGAAGGAAAATGTCCCTATTTCCTGCTTGGTTTTGCTTAAGAAGTTAATGCTTCCTCCATTAAAACTTTTAGTGCTTTATCCAGCTAGCAGCCTCAGAAAAGGGTGACTGTTGAGTCACAACCCAAGAAAATGACTAACAGTAGACAGTGAGGCAGCTGAATGCTCATGGCTCCAGCTTGGGTGTAGGGTCTTTGGAGTCCATTTCTTAATCTCCCACTACTGTCAGTGTTATGTTTTCTGACACGAAGACATAAGGGCAGGACTATCTTTCATCAGCAGGCGTTCAGAAAATGTTTACAGAATGGCTAAATGAATAAACAAGCTTTTCCATGGAAGTTTGCCAAGAGGAGATTAAGGAGGGTCCAGGTAAATTGGAGTCATTTTGCTTATCAGGAGCAAGCCACTTTATTGCTGCAGAAGGAGCATGTACATGTGTGCACATTGTGGCTGGGAAAGGTTTGTATAGTGATCCCTGCTGGGCTGCAGAGTCATGCAACTTGCAGAATTCTTTTGTTTCCTGTATCTTTTTTTTTTTTTTTTTTTTTTTTGAGACAAAGTCTCACTCTGTTGCCCAGGCTGGAGTGCAGTGACACAATCTCAGCTCACTGCAAGCTCCGCCTCCTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTACAGGTGCCTGCCACCACGCCCAGCTAATTTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTAGCCAGAATGGTTTCGATCTCCTGACCTCATGATCCTCCCGCCTCGTTCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCACGCCTGGCCTGTTTCCTGTATCTTTTTTCATCTCCTGCCAGGGTTACAAAACAGGCAGTGCAGTAATCATTATCTCCATTTGACAAGTGAAGTGAGCACATGTAGTAAGCATTCCCTTGCCCGAAAGATTTAGCTGAGGTGTGGTTGTTTCTGATTACCATCAAGTGGGAGGACCAGGATTTTCCATCTCCCTAGTTTCTAAGCCAACAGCTTTTCTCTAGGGTCTTGCTGTGGAATGCCATATTAGAATGAGGTTTTCATGTCTTCAAGGAAGGGAAACCTGTGATTCTGTATTAGTCTGTTTTCACACTGCTATAAAGAACTACCTGGGTAATTAAAAAGAAAAGAGGTTTAATTGGCCCACAGTTTCACAGGCTTAACAGGAAGCATGACTGGGAGGTCTCAGGAAACCTACAATCATGGCAGAAGGCAAAGAGGAAGGAAGGACCTTCTTCACATTGTGGCAGAAGAGAATGCAGGGGGAAGTGACACATACTTTTAAATGATCAGATCTCATGAGAACCCACAAGAACACCAAGGGGAGATCTACCCCATGATCCAGTCATCTCCCACCAGGCCCCTCCTCCAATTCGTTGTGAGATTTGGGTGGGAACACAAATCTAAACCACTATTATTCTGCCCTGGCCCCTCCCAAATCTCATGTTCTTTTCACATTGCAAAATACAATTATCCCTTCTCAACAGTCCCCCAGACTTAACTCATTTCAGCATTAACTCAAAAGTTCACAGTCCAAAGTCTCATCTGAGACAGGGTAAGTCCCTTCCACCTATGAGCCTGTAAAATAAAAAACTAGTTAGTTACTTCCAAGATACAATGGGGATATAGGCATTGGGTAAATGCTCCCATTCCAAATGGGAGAAATTGGCCAAAACAAAGGGGTTACATGTCCCATGCAAGTCCAAAACCAAGCAGGGCAGTCATTAAGTCATAAAGCTCCAAAATAATCTCCTTTGACTCCATGTCTCACATCCAGGGCATGCTGATGCAAGAGATCAGTTCCCAAGGCCTTGGGCATCCTGGCCCCTGTGGCTCTGCAGGTTATAGCCCCCATGGCTGCAGTCACCAACTGACATTGAGTGCCTGTGCCTTTTCCAGGCACATGGTGCAAGCTGCTTGTGGATTTACCATTCTGGGGTCTGGAGGATGGTGGCCCTCTTCTCACAGCTCCACTAGGGAATGCCTCAGCAAGACTGTGTGGGGGCTCCAACCTTGCATTTCCCCTTCACACTGCCTTAGTAGAGGTTTTTCCATGACAGTTTTGCCCCTGCAGCAGACTTCTGCCTGGACATCCAGGTGTTTCCATACCTCCTCTGAAATCTAGGAGGAGATTCCCAAACCTCAACTCTTGCCTTCTGCACACCTGCAGGCCCAACAACATGTGAAAGCTGCCAGCTTGGGGCTTGCACCCTCTGAGGACACAGCCTGAGCTATACCTTGGCCTCTTTTAGCCACAGCTGGAGCTGGAGTGGCTGGGACACAGGGGACCATGTCCTGAGGCTGCACAGAGCAGCTAGGCCCTGGGCCTAGCCCATGAAACCATTGTTTTCTCCTAGGCCTCCAGGCCTGTGATGAGAGGGGGCTGCTGTGAATGTCTCTAAAATGCCCTGGAGACGTTTTCCCCATTGTGTTGGCTATTAAAATTTGGCTCCTCTTTACTTATTCAAATTTCTGCAGCAGGCTTGAATTTCTCCCCAGAAAACGGGTTTTTCTTTTCTACCACATGGCCGGGCTACAAATTTTCCAAATTTTTATGCTCTGCTTCCCTTTTAAATATAAGTTCCAGTTTCAGATCTCTTTGTTCACAAATATGAGTGGACACTTTTAGAAACAGCCAGGTCACTTCTTGAATGCTTTGCTGCTTAGAAATTTCTTCTGCTAGAGGGCTGGGCGTGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACGAGGTCAGGAGATCGAGACCACGGTGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCATGGCGGCGGGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCATGAACCTGGGAGGCGGAGCTTGCAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGTGACAGAATGAGACTCCATCTCAAAAAACAAAAAAAAAAAAAGGAAATTTCTTCTACTAGATACCCTGAATCATTTCTCTCAAGTTCAAAGTTCCACAGATATCTAGAGCAGGGGCAAAATGCTGCTGGTCTCTTTGCTAAAGCATAGCAAGAATGACCTTTGCTCCAGTTCCCAATATGTTTTTCATCTCCATCTGAGACCACCTCAGCCTGGATTTCATTATCCATATCACTATCAGCATTTTAGTCAAAACCATTCAACAAGTGTCTAGGAAGTTCCAAACTTTCCCACATCTTCCTGTCTTCTTTTCAGCCCTCCAAACTGTTTCAGCCTCTACCTGTTACCCAGTTCCAAAGTTGCTTCCACATTTTCAAGTATCTTTATAGCAGTGCCCCACTTTCCTGGTACCAATTTTCTATGTTAGTCCTTTTTCACACTGCTGTAAAGAACTACCTGAGATTAGGTAATTTATGAAGAAAAGAGGTTCAGTCGACTCACAGTTCTGCAGGCTTAACAGAAAGCATGACTGGGAGGCCTCAGGAAACTTAAAATCATAGTGGAAGTTGAAGAGGAAGCAAGGATCCTCTTCACATTGTGGCAGGAAAGAGAGAGCACACAGAGGAAAGTGCCACACACTTTTAAACAATCAGATTTCATGAGAACTCACTATTACAAGAACAGCAAGGGGGAAATCTTCCCCCCCTACCCCCACCCCCCGTGATCCAGTCACTTCCCACTGGGCCCCTCCTCCAATTCAACATGAGATTTGGGCGGGGACAGAAATCCAAACCATATCAAAGTCCTAGATAATGAACAGGAACTTTACCAGGATTAAATTATTAGTGGATTACAAAGTTGAATTATCACAGTGCAGTAAGTTCTACCTTCTGCCAATACCCAGAGCTCCTGTATTGAAGAGCTGTGACTTCCATTTTAGAGAGTCTTTCAGTTTCAAAGAACCTTTCAGTAGGAGAGCTTGGGAACTACAGAATCCAGGGAGCCTGCTGGTCCTACCACTACACTGGTGAGATATATATTAAAGGAGAGAGTCCCTTAACATCTCAGCAGATGCAGCCTAATAGGGTGAATCCTGTGTGGTTTATTGAAGGAGAAGTTATTTTTACCTCATGCTGTGCTATGTACATACCAGAGCAAGTGAACTTTAAAATGTGCCTTATTTAGATAATATTTTAGGTTTTCTGCCCTACATGCTGGTAAAAGGAGCAACCATGAGATTGTGAGGAGCTGGTTTGATGACAATAAGCAAGGGTTAGAAATAAAATGTCTATGTTCTGAGGTATTCTCAAGATCTCTACAGATTAGTGTGTCTGATCTTATTTGGCTTTTAAAATATAAATTATTGGGGAGAAGTAGTACATATTGAAAACTGAGTTTGCAGATAACCTTAAAGTCTTTTAGCAAAATATCAACAGGAAGTCAGTCAGCAGATATTAATTGAACACCATTGTAGGGCTATATGTTGTTTTGGAGCTAGTGATCAAGACAAAAGTTCTTACCCTCAAAAAACTCACACTCTGTTGGGGAAACATAGACAATAAAGACATAAGTAAGATTACTTAAAGATTAATACATGCAATCTAGAAATTATAATTGGTTAATTGAGTCTGACTATCCCTGCTTTGTCAGTGTGCTCAGAGAAAGCTTCTCTGAAGAGGAGATACTTTTGCTCAGAGAAATTGGAAAAGCTCTCCTGGTATGCCAGCCACTGTTCTGGGTATTGCTTCAGCTGTTAGTGTCAGTAGCATTATTTGTGCACATCCACAAATCTTATCTTTTTTTACACTTATCTTTTTTTACCTCCTTTGTACTTCTTTTTTTGTTTGTTTGGTTTTTGTTTTTGTTTTTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTAGAGTGCAGAGGCGTGATCTCGGCTCCCTGCAAACTCCACCTCCCAGGATCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGACTACAGCTGCGTGCCACCATGCCTGGCTAATTTTTTTGTACTTTTAGTAGAGACAGGATTTCGCCATGTTGGCTAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCCAACCACCTCGGCCTCCAAAAGTGCTGGGATTACAGATGTGAGCCACTGCGCCTGGCCTATCCTTTGTACTTCTGATTATTCCTTTCTGTCAGCTAAGGCCCTAGAGAATGTACTGAATTGCTCTCCTGGCTCCCTTTTTAAATGGTTCTTCATAAGAAAATATGTGTCTGAAGACCTGACACAGAGTGGAAATGGTTATAGAATCTGGTCCTCAAGCCCCTACCAAAAGGGTCAACAGAGGGATGGCAAGTAGAATTGCAAGCTTTAGATTCTGCTTTCACAGTTTTTTTTTTCCCCCAGTAGACTGTAGTGGTGGGGCTGGAAGGACACCCTGGCTCTTCTTTTCCCTGGCTTTCTTTCTGGAGGGAGCTGCTTAGAGGTTTTGGGTTCAGTACCTTCAAGGATGCTCTTTTGAACCCAATTGTATTTCCCTCTCTCTAG
Seq C2 exon
GTTTCAGCCCCAGCACAGAAACAGGAAATGCATTTTGAGGAGACAACAGCTCTGGGTACAACAAAGGAATCTCCTCCTACCTCACCCCTCAGTGGGGGCTCAGCCCCTGGAGCCCACCTGGAGCCTCCTTATGACCCAGGGACACACCACCTCCCCAGTGGGGACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196345:ENST00000273320:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=NA C2=0.990
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.9=66.0)
A:
NA
C2:
PF0202312=SCAN=PD(1.0=1.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains