RnoINT0169035 @ rn6
Intron Retention
Gene
ENSRNOG00000004104 | Zkscan7
Description
zinc finger with KRAB and SCAN domains 7 [Source:RGD Symbol;Acc:1305242]
Coordinates
chr8:131934947-131938203:+
Coord C1 exon
chr8:131934947-131935470
Coord A exon
chr8:131935471-131938037
Coord C2 exon
chr8:131938038-131938203
Length
2567 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TCCTCATCTCTAACCTCTAGGTT
3' ss Score
10.23
Exon sequences
Seq C1 exon
GTGACACTCTCCTCACCTCCTTTCTTGACTCTGAAAAACAGTTCCTGCAGCTTGAAGCAGAGACTCATTTCCAGTGTGCCTGCTGTAGCTGGGACCAGCTTCTCTCTGGGATCACAATGACCATGGAAGGCAGGGGGACACTAGATATCATCCCCAGGACTGCGGTGTATCAGAAGCAGGAGGGGAGCTTGACTGTAAAGCAGGAACCAGGAAGCCAGACCTGGGGACAGAAGAACTGCCCTCCTGTCTGTGAAATATTCCGACTGCACTTCAGGCAGCTGTGTTACCATGAGATGTCTGGCCCTCAGCAGGCCCTGAGCCGGCTCAGGGAGCTCTGCCACTGGTGGCTGATGCCAGAGGTCCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGAGCATCCTGCCCAGGGAGCTTCAGACCTGGGTGCAGCTGCATCACCCCGAGACTGGCGAGGAGGCTGTGGCCGTGGTGGAGGATTTCCAGAGACACCTTAGTGAGTCAGGGGAG
Seq A exon
GTAAGCAGTCAGTCTATAAGAACATCTAGAACCACTCTCTAGACTTGGGCTAGCCTGAGAACAAGTGTTCGCCATACCCCACACGTTAGGCTGTTTTGCTTATAGGATCCATGAACTTGATCCACTGACTGACGGGAAATAGTTTTCTGCTGCCAAGCCATAGAAAAAATACAACTAGCTTTCTTAGTCAATATTTTATTGCTACAAAGAGACACTGACCAAAGCAACTCTCTCTTTCTTTTAAGATTTATTTTATTATATGAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAAAGATGGTTATGAGCCACCATGTAGTTGCTGTGTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACGGATGAGCCATCTCTCCAGCCCCCAAAGCAACTCTTATAAAAGCGTGAAATTGTGGACGTTCTTCCAGTTTTAGACATCAGTCCCTTAGAATGACAGGGAGCTTGCTGGCACACAGCCTTACGTGGTGCTGGAGAAGGAGCTGTGAGCTCTGTGTCCTGAGCTGGAGAGAGGGAGAGGCTGAGAAACTTCAAAGCCCACCCCAGAGGATCTTCTAATCCTTTTAAATAGTGCCACTCCCTGGTGACTAAGTATTCAAATCTATGAACCTGTGGGGGCCAGTCTTATTCAAATCACCACACAAGCCAAGCGCCTAGGCAGGTGTGTTTATGTGGAGGAAAGGTGGGTGTAGAGGGGCGTGTGTGTTGGGGGGGGGCTTATGCTATAGAGAACAACCTCAGGCGTTCCTCTTATGCAGAAAAGATCTTCCTGACCCGAATCATTTGTTAGACAGGCTGTTGGCCTATGAGCCCTGGGAGTCTGACTGTTATGCCTCTTCAGGACTGGAATTACAAACATGTGCTATCATGCCTGACTCTTTTACATTAGTTCTGGGAATCCCAACATAGGTTGTCATGGTTGCATGTAAAGCACTGTATTGACTGAACCAACTCCCCAGTCCTGGTTCATTTTTTTAAGTAATTGTAGATGAAAACTCTTTAGGGCAGTAGCTGTAGTTATAGGCAAAAGACAGAATTTAACATACTGTAGTAACCAAATCTTCTGATCCACCGGCAGTTAAATCCTGCTAAAGTGCTAGTATTTTATCTAGGACTCCGGCGCGTGGGTTTCCTTCCCTTAAGCCACCACACGAACCATTTACAGGCAATAAAACTCATTAGAGACACACATCTCTGTTTCTGCTTTCCTACTTGAACATGGTTATGCATAGATATATTAGTTTTTTAAAACAGGATTTCTTTTTTTAAAAGATTTATTTATTTATTATGATTAAGAATTCCAGAAGAGGGCACAAGATCTCATTATAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCACACAGTGCCTTAACCGCTGAGCCATCTCTCCAGCCCCAAAACAGGATTTCTTTAACCAGGGGATCAGTGGTTAGGCTAGGTTTCTGGCCTATGAGCCCCAGAGGATCTGACATAGACCTAAGTAAGGCTAAGAAGGCCACTTAGCCCTGTGGTTCTTAGAAGGCAGCTTTTGCAGTGTCATAATTCTTACACATGGACATAGATACTGAGTGGCTGATGCCTAAGGAAGAGAGACAGCTGAAGTTGTCTTCCAGCTCCTACACATGTGTACGTGTGCACCAGCATGTGCACGCACGTTCACACCCACATTTATACCACAAGGATTCATTCAGTAAATAACGTGGGAACTAAAGTCCCTAGGCTTAGTAGTATTTACCACCTGTGATGGCTTGAATAAGCTTGGCTTAGGGAGTGGCACTATTAGGAGGTGTGGCCCCGTGGGCATTGGCTTAAGACCCTCATCCTAGCTGCCTGGAAGTCAGTATTCTGCTAGCAGCCTTCAGATGAAGATGTAGAACTCTCAGCTTTGCCAGTACCATGCCTGCTGTATGCTGACATGTTCCTGCCTTGATGATAATGGACTGAACCTCAACCTGTAAGGCAACCCCAATTACATGTTTTCCTTATGTGAGTTTCCTTGACTAACTAAGATGCCATCTGAGCTATCTTAATAGCTACATACAATTCTTAAGCTAATGCCCTGACACTGTGGAGCTGGCTATCTGTTCTTCTAGCTCCTAGGAGGAAAGTTAAGGGATGGATGGCAGGGAAGACGGCAAGCTTTGAGATTAGTGGAAAGATAGCCCGGTCCAGTCCTTCGTTTCCCTGGCCTTTTTCTTGTATAGCGTATCTTTGAGGTCTGGGTTCTCTGCCTTAAAGAATGTACTTTGAGTGGACTGGAGGGATGGCTCAGTGATTAAGAGCACTGGCTCTTCTTCCAGAGGACCTGGGTTCAATTCCCAGCACCCACATGGCAGCTTACAACTGTTCATAACTCCAGTTCCTGGGATACAACACCCTCACAGACATACATGCAGGCAAAACCGCCAATGCAGATAAAATATAAACAAACAAATTTAAAAAAAGAATGTACTTTGAACCTGGTTCTGTTTCCTCATCTCTAACCTCTAG
Seq C2 exon
GTTTCACCTCCAGTACAAGAACAGGATGTGCATTTAAAGAAGATGGTAGCTCTGCGTGCCACAGAGCAGTCGCCTACCTTAACCTCTGGTTGTTGCTCAGCCCCTGATGACCTCTTGAATCCTCCCTGTGACCCAGGAGCACACCACTTCCCCAGTGGACACTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004104:ENSRNOT00000043784:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=NA C2=0.536
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.9=68.4)
A:
NA
C2:
PF0202312=SCAN=PD(1.0=1.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]