MmuEX6070029 @ mm9
Exon Skipping
Gene
ENSMUSG00000063488 | Zfp167
Description
zinc finger protein 167 [Source:MGI Symbol;Acc:MGI:3040678]
Coordinates
chr9:122797589-122801509:+
Coord C1 exon
chr9:122797589-122798067
Coord A exon
chr9:122799777-122799924
Coord C2 exon
chr9:122801436-122801509
Length
148 bp
Sequences
Splice sites
3' ss Seq
TCCTCGTCTCTAATCTCTAGGTC
3' ss Score
10.57
5' ss Seq
ACGGTACTC
5' ss Score
4.58
Exon sequences
Seq C1 exon
GCAGTTTGAAGCAGAGACTCATTTTCAGTGTGCCTGCTGTAGCTGGAACCAGCTTCTCTTTTGGGATCACAATGACCATGGAAGGCAGGGGGACATTAGATATCATCCCCAGGACTGCCATGTATCAGAAGCAGGAGGGGAACTTGACTGTGAAGCAGGAACCAGGAAGCCAGACATGGGGACAGAAGAACTACCTTCCCGTCTGTGAAATATTCCGACTGCACTTCAGGCAGTTGTGCTACCATGAGATGTCTGGGCCTCAGCAAGCCCTGAGCCGGCTCAGGGAGCTCTGCCACTGGTGGCTGATGCCAGAGGTCCACACCAAGGAACAGATCCTGGAACTGCTGGTGCTGGAGCAGTTCCTGAGCATCCTGCCCAGGGAGCTTCAGACCTGGGTACAGCTCCATCACCCTGAGACTGGCGAGGAAGCTGTGGCTATGGTGGAGGATTTCCAGAGACACCTTAGTGAGTCAGGGGAG
Seq A exon
GTCTCACCTCCAGTACAAGAACAGGATGTGCATTTAAAGAAGATGGGAGCACTGAGTGCAGCTGAGCAGTCGCCTACCTCAACCTCCAATCAGGGCTTGGCCCCTGGTGCACTCTTAGATCCTCCCTGTGACCCAGGAGCTGGACACG
Seq C2 exon
ATCCTGCTTTTCCCAAAGTGGGGAACCCCAGAGCCCAGGCAGTGGCTACTGTGCTTAGGATGGCCAGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063488-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.980 C2=0.960
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.9=68.4)
A:
PF0202312=SCAN=PD(1.0=2.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCCAGAGGTCCACAC
R:
GGCCATCCTAAGCACAGTAGC
Band lengths:
242-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: