BtaEX6093683 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr22:16415882-16438819:+
Coord C1 exon
chr22:16415882-16416304
Coord A exon
chr22:16437103-16437262
Coord C2 exon
chr22:16438728-16438819
Length
160 bp
Sequences
Splice sites
3' ss Seq
TTTTATTTCCTTGTCTCTAGGTT
3' ss Score
11.78
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
Exon sequences
Seq C1 exon
ATGGCTACCCAAGGCAGGGGAACTTCAGGCCTCTTCCCCAGGGGTGCTGTTCTCCAGAGACAGGAGGGCTGCCTGACCGTGAAACAGGAACCAGGGAGCCCGACCTGGGGGCATGGCTGCAGTCTCCAAAAGAATCACCCTCCTGTCTGTGAAATTTTCCGGCTCCACTTTAGGCAGTTATGTTATCATGAGATGTCTGGGCCACAGGAGGCACTGAGCCGGCTCCGGGAGCTGTGCCGCTGGTGGTTGATGCCAGAGGTGCACACCAAGGAACAGATCCTGGAGCTGCTGGTGCTGGAGCAATTCCTGAGCATCCTGCCTGGGGAACTCCGGACCTGGGTGCAGATGCATCACCCTGAGAGTGGTGAGGAAGCTGTGGCTGTGGTGGAGGACTTCCAGAGATACGTCAGTGGGCCAGGAGAG
Seq A exon
GTTTCCACTCCAGGGCAGGAACAGGAGATACATTCTGAAGAGAAGACAGCCTTGGGTGCAACACATGAATCTCCTTCTACCTCACCCCACAGTGAGGGTTCAGCCCCTGGAGCCCACCTGGAGCCTCCTCGTGATCCTGGGGCACACCACCACCTCTCCA
Seq C2 exon
CTCAGAGTGCTTCCCCGGTGCCCACCCTTCCCCAAGTGGGGAACTTAAGAAACCAAGTAGTAGCAACTGTGCTTTCGATGGTCAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003622-'0-4,'0-3,4-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.106 A=1.000 C2=0.581
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.9=66.0)
A:
PF0202312=SCAN=PD(1.0=1.9)
C2:
NO
Main Skipping Isoform:
ENSBTAT00000023585fB25
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCACACCAAGGAACAGATC
R:
CCTGACCATCGAAAGCACAGT
Band lengths:
251-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]