RnoEX0101941 @ rn6
Exon Skipping
Gene
ENSRNOG00000004104 | Zkscan7
Description
zinc finger with KRAB and SCAN domains 7 [Source:RGD Symbol;Acc:1305242]
Coordinates
chr8:131934947-131939733:+
Coord C1 exon
chr8:131934947-131935470
Coord A exon
chr8:131938038-131938203
Coord C2 exon
chr8:131939660-131939733
Length
166 bp
Sequences
Splice sites
3' ss Seq
TCCTCATCTCTAACCTCTAGGTT
3' ss Score
10.23
5' ss Seq
TCGGTACTC
5' ss Score
3.1
Exon sequences
Seq C1 exon
TTGACTCTGAAAAACAGTTCCTGCAGCTTGAAGCAGAGACTCATTTCCAGTGTGCCTGCTGTAGCTGGGACCAGCTTCTCTCTGGGATCACAATGACCATGGAAGGCAGGGGGACACTAGATATCATCCCCAGGACTGCGGTGTATCAGAAGCAGGAGGGGAGCTTGACTGTAAAGCAGGAACCAGGAAGCCAGACCTGGGGACAGAAGAACTGCCCTCCTGTCTGTGAAATATTCCGACTGCACTTCAGGCAGCTGTGTTACCATGAGATGTCTGGCCCTCAGCAGGCCCTGAGCCGGCTCAGGGAGCTCTGCCACTGGTGGCTGATGCCAGAGGTCCACACCAAGGAGCAGATCCTGGAGCTGCTGGTGCTGGAGCAGTTCCTGAGCATCCTGCCCAGGGAGCTTCAGACCTGGGTGCAGCTGCATCACCCCGAGACTGGCGAGGAGGCTGTGGCCGTGGTGGAGGATTTCCAGAGACACCTTAGTGAGTCAGGGGAG
Seq A exon
GTTTCACCTCCAGTACAAGAACAGGATGTGCATTTAAAGAAGATGGTAGCTCTGCGTGCCACAGAGCAGTCGCCTACCTTAACCTCTGGTTGTTGCTCAGCCCCTGATGACCTCTTGAATCCTCCCTGTGACCCAGGAGCACACCACTTCCCCAGTGGACACTTCG
Seq C2 exon
ATCCTGCTTTTCCCAGAGTGGGGAACTCCAGAGCCCAGGCAGTGGCTAGTGTGCTTAGGATGGTCAGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004104-'5-4,'5-2,6-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.536 C2=0.520
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PU(96.9=68.4)
A:
PF0202312=SCAN=PD(1.0=1.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCCAGAGGTCCACACCAA
R:
GCCTGACCATCCTAAGCACAC
Band lengths:
244-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]