HsaEX0073098 @ hg38
Exon Skipping
Gene
ENSG00000196345 | ZKSCAN7
Description
zinc finger with KRAB and SCAN domains 7 [Source:HGNC Symbol;Acc:HGNC:12955]
Coordinates
chr3:44565487-44568433:+
Coord C1 exon
chr3:44565487-44565655
Coord A exon
chr3:44567912-44568003
Coord C2 exon
chr3:44568307-44568433
Length
92 bp
Sequences
Splice sites
3' ss Seq
AGCTTTCTTTCCTCCCTCAGCTC
3' ss Score
8.58
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTTCAGCCCCAGCACAGAAACAGGAAATGCATTTTGAGGAGACAACAGCTCTGGGTACAACAAAGGAATCTCCTCCTACCTCACCCCTCAGTGGGGGCTCAGCCCCTGGAGCCCACCTGGAGCCTCCTTATGACCCAGGGACACACCACCTCCCCAGTGGGGACTTCG
Seq A exon
CTCAATGTACTTCTCCAGTTCCTACCCTTCCTCAAGTGGGGAACTCAGGAGACCAAGCAGGGGCAACTGTACTTCGGATGGTCAGGCCCCAG
Seq C2 exon
GATACTGTGGCATATGAGGACCTATCTGTAGACTACACTCAGAAGAAATGGAAAAGTCTCACACTCAGTCAGAGAGCCCTGCAGTGGAACATGATGCCAGAAAATCACCATAGCATGGCCTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196345-'3-9,'3-7,4-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=0.972 C2=0.441
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(1.0=1.8)
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTACCTCACCCCTCAGTG
R:
GGGCTCTCTGACTGAGTGTGA
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development