RnoEX0101942 @ rn6

Exon Skipping

Gene

ENSRNOG00000004104 | Zkscan7

Description

zinc finger with KRAB and SCAN domains 7 [Source:RGD Symbol;Acc:1305242]

Coordinates

chr8:131938038-131950776:+

Coord C1 exon

chr8:131938038-131938203

Coord A exon

chr8:131939660-131939733

Coord C2 exon

chr8:131947026-131950776

Length

74 bp

Sequences

Splice sites

3' ss Seq

AGTTCACCTTTCACCCCCAGATC

3' ss Score

8.9

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

Exon sequences

Seq C1 exon

GTTTCACCTCCAGTACAAGAACAGGATGTGCATTTAAAGAAGATGGTAGCTCTGCGTGCCACAGAGCAGTCGCCTACCTTAACCTCTGGTTGTTGCTCAGCCCCTGATGACCTCTTGAATCCTCCCTGTGACCCAGGAGCACACCACTTCCCCAGTGGACACTTCG

Seq A exon

ATCCTGCTTTTCCCAGAGTGGGGAACTCCAGAGCCCAGGCAGTGGCTAGTGTGCTTAGGATGGTCAGGCCTCAG

Seq C2 exon

GTAAGAACAGGATGGGAAGTTCTGAGTACAGCCCCAAGCAGGGCATTTCTAAAGGATCACATTCACTTGACACATCCTCAGGAGGACTCTTTGGAGTGGCCCTGGTAGAACCAGAGTCTGGAGATATCTGTGAAGACCCTTTAGCACAGGTGGAAGGGTGTCCCTCAGATGAAGGCAGTGAACTAGAAAGTGATTTCCTGGAAAAGAATGATGAGAAAAATTCCACCAAAGACAGAATCGAGGACAGTAAAGATGTAAGGGAACGTCCAGAATCGCCCTCCAGTCCTGCTGAGCATCAGAGAGAAGCCAAGAGGCAGAATTCCTATCAATGTGATGAATGTGGCAAAATTTTTAACCGGAGCTCACACCTCCTTGGACATCGGAGAATCCACACTGGAGAGAGACCCTCTGAATGTAATGAGTGTGGGAAGACCTTCCTACAGACATCTCAGCTAATTGTTCACCTCAGAACACACACTCAGGAAAAACCTTATGAATGT

VastDB Features

Vast-tools module Information

Secondary ID

ENSRNOG00000004104_MULTIEX1-1/2=C1-C2

Average complexity

C2

Mappability confidence:

100%=100=100%

Protein Impact

ORF disruption upon sequence exclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.536 A=0.520 C2=0.298

Domain overlap (PFAM):

C1:

PF0202312=SCAN=PD(1.0=1.8)

A:

NO

C2:

PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.0),PF134651=zf-H2C2_2=WD(100=5.2),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=5.5)

Main Inclusion Isoform:

ENSRNOP00000051121