RnoINT0169037 @ rn6
Intron Retention
Gene
ENSRNOG00000004104 | Zkscan7
Description
zinc finger with KRAB and SCAN domains 7 [Source:RGD Symbol;Acc:1305242]
Coordinates
chr8:131939660-131940124:+
Coord C1 exon
chr8:131939660-131939733
Coord A exon
chr8:131939734-131940030
Coord C2 exon
chr8:131940031-131940124
Length
297 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATAGAAGCTTGTCGTTCTAGGAG
3' ss Score
2.96
Exon sequences
Seq C1 exon
ATCCTGCTTTTCCCAGAGTGGGGAACTCCAGAGCCCAGGCAGTGGCTAGTGTGCTTAGGATGGTCAGGCCTCAG
Seq A exon
GTGAGTGTGGCTCTGTTTTTCTTGAGTCCGTGTCTGGGTGTGTGGTGAGGGTGTCGGGAGGATGGCTGGGACTCACCTGCAGACCCTACCCACCTGAGGTAGCTCCTTTGGCCTTCCTGCCTAGTTCTTCCCTTGGAGCTAGGCCCCTGCTCCTGGCTTTAACAGGTTTCATTTAACCCCCGTTCTGTCCTCTTCGATGTGTTCACTACCCTTTTGTTCTGGGTGACTTCTATGTGCCTGAGAACTCTACTCCTCTGGCTGGGGTTGTTTCTGAACAATAGAAGCTTGTCGTTCTAG
Seq C2 exon
GAGACTGCAGTGAACAAGGCCTGTATGCAGGAAAAGTGGAGTGTCCTGTGTGAGGCGGAGGTGGTGAGAGATGAGCACGGCCCGGCCTATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004104:ENSRNOT00000043784:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.520 A=NA C2=0.188
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCTTTTCCCAGAGTGG
R:
GGCCGTGCTCATCTCTCAC
Band lengths:
156-453
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]