HsaINT0186290 @ hg19
Intron Retention
Gene
ENSG00000196345 | ZNF167
Description
zinc finger protein 167 [Source:HGNC Symbol;Acc:12955]
Coordinates
chr3:44609404-44609925:+
Coord C1 exon
chr3:44609404-44609495
Coord A exon
chr3:44609496-44609798
Coord C2 exon
chr3:44609799-44609925
Length
303 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ATTGGAGCTTGTCATTCCAGGAT
3' ss Score
3.29
Exon sequences
Seq C1 exon
CTCAATGTACTTCTCCAGTTCCTACCCTTCCTCAAGTGGGGAACTCAGGAGACCAAGCAGGGGCAACTGTACTTCGGATGGTCAGGCCCCAG
Seq A exon
GTGAGCTTGGTTCTTTGTGTTTTTACCAAGTCCCCATGAGTCTGGTCCAAGAATGGCTAGAGGTCTCACCCCCAGGACTCTGCCCCATCTAAGACTATTCCTGTGGCTCTCCTGCCTCATTACTTCCCCTGGAGGTAATGGACTCTATCTTGCCCTGGACTTGTCCTTTTCGAGGTGTCATCTCAGCTCCTCTCTCCCATACTTTTGCCCATGAAGAGCCCATACCCTGTGCCCTTCGTACCCCTGATGACTCTGCCCTTCAGGCTGTGAATGTTCCTGAGCGATTGGAGCTTGTCATTCCAG
Seq C2 exon
GATACTGTGGCATATGAGGACCTATCTGTAGACTACACTCAGAAGAAATGGAAAAGTCTCACACTCAGTCAGAGAGCCCTGCAGTGGAACATGATGCCAGAAAATCACCATAGCATGGCCTCCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196345-ZNF167:NM_018651:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=NA C2=0.471
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACTTCTCCAGTTCCTACCCT
R:
CCAAGGAGGCCATGCTATG
Band lengths:
214-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)