MmuINT0178663 @ mm9
Intron Retention
Gene
ENSMUSG00000063488 | Zfp167
Description
zinc finger protein 167 [Source:MGI Symbol;Acc:MGI:3040678]
Coordinates
chr9:122801436-122801896:+
Coord C1 exon
chr9:122801436-122801509
Coord A exon
chr9:122801510-122801802
Coord C2 exon
chr9:122801803-122801896
Length
293 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ATAGAAGCTTATCGTTCCAGGAG
3' ss Score
1.62
Exon sequences
Seq C1 exon
ATCCTGCTTTTCCCAAAGTGGGGAACCCCAGAGCCCAGGCAGTGGCTACTGTGCTTAGGATGGCCAGGCCTCAG
Seq A exon
GTGAGTGGCTCTGTTTTTCTTGAGTCCACGTCTGGGTGTGTGTGTGTCTGGGTTGGGGGAATGGCTGGGATTCACCTGCAGACCTACCCACCTAAGGTAGCGCCTTTGTCTCTCCTGCTTAGTGCTTCCCTTGGAGCTAGGCCCTTGCCCTTGGCTTTAACAGTTTCATTTAGGACAGTTTTGTCCTCTTTAATGTGTCTACTACCCTTTTATTCTGTGTGACTTCTGTACGCTTAAGAACTCTGCTTCTCTGGCTGGGGTTGTTTCTGAACAATAGAAGCTTATCGTTCCAG
Seq C2 exon
GAGACGGCAGTGAACAAGGACTATAAGCAAGAAAAGTGGAGTGTCCTGTGTGAGACGGAGGTGGTAAGAGATGAGCACGGCCTGGCCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063488-Zfp167:NM_001177505:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=NA C2=0.438
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTGCTTTTCCCAAAGTGG
R:
CAGGCCGTGCTCATCTCTTAC
Band lengths:
158-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: