MmuEX0053056 @ mm10
Exon Skipping
Gene
ENSMUSG00000063488 | Zkscan7
Description
zinc finger with KRAB and SCAN domains 7 [Source:MGI Symbol;Acc:MGI:3040678]
Coordinates
chr9:122890659-122892778:+
Coord C1 exon
chr9:122890659-122890806
Coord A exon
chr9:122892318-122892391
Coord C2 exon
chr9:122892685-122892778
Length
74 bp
Sequences
Splice sites
3' ss Seq
AGTTCACCTTTCACCCCCAGATC
3' ss Score
8.9
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCTCACCTCCAGTACAAGAACAGGATGTGCATTTAAAGAAGATGGGAGCACTGAGTGCAGCTGAGCAGTCGCCTACCTCAACCTCCAATCAGGGCTTGGCCCCTGGTGCACTCTTAGATCCTCCCTGTGACCCAGGAGCTGGACACG
Seq A exon
ATCCTGCTTTTCCCAAAGTGGGGAACCCCAGAGCCCAGGCAGTGGCTACTGTGCTTAGGATGGCCAGGCCTCAG
Seq C2 exon
GAGACGGCAGTGAACAAGGACTATAAGCAAGAAAAGTGGAGTGTCCTGTGTGAGACGGAGGTGGTAAGAGATGAGCACGGCCTGGCCTCTCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063488-'6-7,'6-6,7-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.940 A=0.462 C2=0.438
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(1.0=2.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGCAGTCGCCTACCTCAA
R:
GCCGTGCTCATCTCTTACCAC
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types