BtaEX6093682 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr22:16437103-16439252:+
Coord C1 exon
chr22:16437103-16437262
Coord A exon
chr22:16438728-16438819
Coord C2 exon
chr22:16439129-16439252
Length
92 bp
Sequences
Splice sites
3' ss Seq
AGATTTCTTTCTTCCTTCAGCTC
3' ss Score
8.52
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTTTCCACTCCAGGGCAGGAACAGGAGATACATTCTGAAGAGAAGACAGCCTTGGGTGCAACACATGAATCTCCTTCTACCTCACCCCACAGTGAGGGTTCAGCCCCTGGAGCCCACCTGGAGCCTCCTCGTGATCCTGGGGCACACCACCACCTCTCCA
Seq A exon
CTCAGAGTGCTTCCCCGGTGCCCACCCTTCCCCAAGTGGGGAACTTAAGAAACCAAGTAGTAGCAACTGTGCTTTCGATGGTCAGGCCCCAG
Seq C2 exon
GAGGCTGCAGAGTTGGAGTTCCTATCTGTGAACTATTCTCAGAAGTGGAAAGGTGCAGCACTCAGCCAGGGAGCCCTGTACCAGAACATCATGCTGGAAAACTGCCACAGCCTGGCCCCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003622-'5-7,'5-4,6-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.581 C2=0.119
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(1.0=1.9)
A:
NO
C2:
PF0135222=KRAB=WD(100=88.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGAAGACAGCCTTGGGTG
R:
GGCAACTGTGAATGCACCATC
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]