HsaEX0073504 @ hg38
Exon Skipping
Gene
ENSG00000169981 | ZNF35
Description
zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]
Coordinates
chr3:44650941-44660789:+
Coord C1 exon
chr3:44650941-44651259
Coord A exon
chr3:44652557-44652701
Coord C2 exon
chr3:44658701-44660789
Length
145 bp
Sequences
Splice sites
3' ss Seq
ATGTGCCTGCTTGTCTCTAGGGT
3' ss Score
9.92
5' ss Seq
TAGGTATGG
5' ss Score
7.37
Exon sequences
Seq C1 exon
TAGGCAGTACTCATCTTGGCCCTGGGAAGAAACTCAAGAAGAAGCTTTTGAAACATAAAGCTTGGATGGGGTTTGACCTCTGCAGGGCAGCGCCCAGCTATAGGAGTTCCCCTGCTGAGCAGAGAAGATGACTGCAGAATTGAGAGAAGCCATGGCCCTAGCCCCATGGGGCCCAGTGAAGGTGAAAAAGGAGGAGGAAGAAGAAGAAAACTTCCCAGGTCAGGCATCCAGCCAACAAGTGCACTCCGAGAACATCAAAGTCTGGGCCCCAGTGCAGGGTCTTCAGACAGGCCTTGATGGATCAGAAGAGGAAGAAAAG
Seq A exon
GGTCAGAACATATCCTGGGATATGGCGGTAGTCCTGAAAGCAACTCAGGAGGCACCTGCTGCTTCAACCCTTGGCAGCTACTCATTACCAGGGACTCTGGCCAAGAGTGAGATACTGGAGACTCATGGGACCATGAACTTTCTAG
Seq C2 exon
GTGCTGAAACCAAGAACCTACAGTTACTGGTTCCAAAAACTGAGATATGTGAGGAAGCTGAAAAACCCCTCATCATATCAGAAAGAATCCAGAAAGCTGATCCTCAAGGACCTGAGTTAGGAGAAGCTTGTGAAAAGGGAAACATGTTAAAGAGGCAGAGAATAAAGAGAGAAAAGAAAGATTTCAGACAAGTGATAGTGAATGACTGTCACTTACCTGAAAGCTTCAAAGAAGAGGAAAACCAGAAATGTAAGAAATCTGGAGGAAAATATAGCCTTAATTCTGGCGCTGTTAAAAATCCAAAAACCCAGCTTGGACAAAAGCCTTTTACGTGTAGCGTGTGTGGGAAAGGATTTAGTCAGAGTGCAAACCTCGTTGTGCATCAGCGAATCCACACTGGAGAGAAACCCTTTGAATGTCATGAGTGTGGGAAGGCCTTCATTCAGAGTGCAAACCTCGTTGTGCATCAGAGAATCCACACTGGACAGAAACCTTATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000169981-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.533 A=0.342 C2=0.064
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=4.8),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF0009621=zf-C2H2=WD(100=5.5),PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGAGAAGCCATGGCCCTA
R:
GGGGTTTTTCAGCTTCCTCACA
Band lengths:
249-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development