BtaEX0041261 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034005 | ZNF35
Description
zinc finger protein 35 [Source:HGNC Symbol;Acc:HGNC:13099]
Coordinates
chr22:16496537-16502686:+
Coord C1 exon
chr22:16496537-16496849
Coord A exon
chr22:16497843-16497987
Coord C2 exon
chr22:16501215-16502686
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTGTGCCTGCTTGTTTCTAGGGT
3' ss Score
9.85
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
ATACTACTCATCATGTCCCTGGGAGGAAACTCAGGAAGAAGCTTTTGAAACTTAAAGATTAGATGGGGCTTGACTTCTGCTGGGCAACCCCCAGCCATAGGAATTCTGCTGAGCAGAGACGATGACCACAGAATTGAGAGAGGCTGTGGCCCTGGCTCACTGGGGCCCAGTGACAGTGAAAAAAGAGGAAGAAGAGGAGGAAGGCTTTGTGGGCCAGGCATCCAGCCAACAAGTGCACTCTGAAAACATCAAAGTCTGGGCCCCTGGGGAAGCTCCTCAGACATGCCTCCCTGTGTCAGAACAGGAGGAAAAG
Seq A exon
GGTCAGAACATGTTCTGGGACATGGCTGTAGTCCTGAAACCAACACAAGAGGCACCTGCTGCTTCAACCCCAGGCAGCTCTTCATTACCAGGGACTCTGGCCAAGAGCGAGCTACTGGACACTCATGGGAACATGGCCTGTCTAG
Seq C2 exon
GTGCTGAAACCAAAAATCGACAGTTATTGGTTCCAAAAATTGAAATATGTGATGAAACAGAAAAATCCTTCATCGTTTCAGGAAGAATCCAGAAAGTTGACCCGCAAGGACCCAAGTTAGGAGAAGCCTGTGAAAATAGGAACATGTTAAAGAGGCAAAGAATAAAGAGGGAGCAGAAAGATTTTGGACAGGTGACAGTGAAGGACTGTCACCTCCCTGAAAACCTCAAAGAAGAGGAAGACCAGAAGTGTCCCAAAGCTGAGGAGCGATACACCCTCAGTTCTGGCTCTGTTAAAAATCAGAAAAGCCAGCCTGGGCAGAAACCTTTTACATGCGGCGTGTGTGGGAAAGGCTTTAGCCAGAGCGCAAATCTCGTGGTGCATCAGCGAATCCACACTGGGGAGAAACCCTTTGAATGTCACCAGTGTGGGAAGGCCTTCATTCAGAGTGCAAACCTTGTTGTGCATCAGCGAATCCATACTGGACAGAAACCCTATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034005-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.766 A=0.694 C2=0.115
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF127602=Zn_Tnp_IS1595=WD(100=12.2),PF134651=zf-H2C2_2=WD(100=6.2),PF0009621=zf-C2H2=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.2),PF134651=zf-H2C2_2=WD(100=6.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCCTCCCTGTGTCAGAAC
R:
CAGGGAGGTGACAGTCCTTCA
Band lengths:
251-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development