RnoEX0101015 @ rn6
Exon Skipping
Gene
ENSRNOG00000032919 | Zfp105
Description
zinc finger protein 105 [Source:RGD Symbol;Acc:1309905]
Coordinates
chr8:132002164-132009981:+
Coord C1 exon
chr8:132002164-132002452
Coord A exon
chr8:132004677-132004821
Coord C2 exon
chr8:132008558-132009981
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTATGCTCACTTGTTTCTAGGGT
3' ss Score
8.28
5' ss Seq
TAGGTAAAG
5' ss Score
6.93
Exon sequences
Seq C1 exon
TGAATAGCTCATCTTGGCTTTGGAGACTTGAAGATTAGATGGAGCTTAACTGTTGGGGGGTGCCTGTCAGCTGTCAAAGATCCTGCACTGAACAGAGAAGATGACTGCAGAGTTGAAAGAGACCATGGGCAGAGCCTCTTGGAGCCCAGTGAAGGTGAAAAAGGAAGAAGATGAAGAATGTGTCATAAGTCAGGCATCCAGCCAACAAGTGTTCTCTGGGAACATCAAGAACTGGGCCCTGGGGGAGGGTCCTTACGTGAGCATCTGTGGATCAGAAGAGGAGGAGAAG
Seq A exon
GGTCAGAAAATGTTCTGGGACATGGCAGTGGTACTAAAAGCAACACAGGAGGCTGCTGCTGCTTCACCCCTTGGGAGCTACTCATTGACAGGGACTCTGGTCAAGAGTGAAATCCTGGAGCCTCATGGGAACCCAACCCCACTAG
Seq C2 exon
GTACCAAAACCAAGAACCTAGAGTTATTGATTCCTAAAACAGAGATATGTGATGACTCGGATAAGCCCCCTATGATTTTAGGAAGAATCCAGAAAGGTGACCTTCAAAGCTCTGAGCTAGGAGAATCTTGTGAAAAGGGAAATATGTTTAAAAAGCTGAGAATAAGGAGAGAAAAAGGAGATTTGAGAAAAGTGAAAGACTGCCCATTGTCTGGAAGCTTCCAAGACGAGGAAGAAGAGAAATCTAAGAAAACTAGGGGGAAATATAGCCTTAGTTCTGCTCCTGCTAAAAAACAGAAAATACAGCCTGGGCAGAAGCCGTTTACGTGTAGTGAGTGTGGGAAAGGCTTTAGTCAGAGTGCAAATCTTGTTGTGCATCAACGAATCCACACTGGGGAGAAGCCCTTTGAGTGTCATGAGTGTGGGAAGGCCTTCATTCAGAGTGCAAACCTTGTTGTGCATCAGAGGATCCACACTGGACAGAAACCCTATGTTTGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032919_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=0.265 C2=0.119
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF0009621=zf-C2H2=WD(100=5.6),PF0009621=zf-C2H2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGAGACCATGGGCAGAGC
R:
AGGGGGCTTATCCGAGTCATC
Band lengths:
246-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]