MmuEX6070030 @ mm10
Exon Skipping
Gene
ENSMUSG00000057895 | Zfp105
Description
zinc finger protein 105 [Source:MGI Symbol;Acc:MGI:1277119]
Coordinates
chr9:122925008-122931028:+
Coord C1 exon
chr9:122925008-122925296
Coord A exon
chr9:122926310-122926454
Coord C2 exon
chr9:122929600-122931028
Length
145 bp
Sequences
Splice sites
3' ss Seq
ACTATATCATTTGTTTCTAGGGT
3' ss Score
8.16
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TGAATAGCTCATCTTGGCTCTGGAGACTTGAAGGTTAGATGGAGCTTGACCGATGTTGGGTATCCCTCAGCTATCAAGGATCCTGCATTGAACAGAGAAGATGACTACAGAATTGAAAGAGACCATGGGCAGAGCCTCTTGGGACCCAGAGAAGGTGAAAATGGAAGAAGATGATGAAAGTGTCATAAGTCAGGCATCCAGCCAACAAGTGTACTATGAGAACGACAAGGACTGTGCCCCAGGGGAGGGTCCTTATGGAAGCATCAGTGTATCAGAAGATGAGGAAAAG
Seq A exon
GGTCAGGAAATGTTCCGGGAAATGGCAGTGGTGCTAAAAGCAACACAGGAGGCTGCTGCTGCTTCACCCTTTGGGAGCTACTCGTTGGCAGGGACTCTGGCCGAGAGTCAAATCCTGGAGCTTCATGGGAACCCAACCCCAACAG
Seq C2 exon
GTGCCAAAAGCAAGAACCTAGAGTTATTGATTCCTAAAAAGGAGATAAGTGATGACTCGGAGAAGCCCCCCATGATTTTAGGAAGAATCCAGAAAGGTGACCTTCAAGGACCTGAGTTAGGAGAATCTTGTGAAAAGGGAAATGTGTTAAAAGGGCTGAGGATAAAGGAGGAAAAGGGAGATTTGGGAGAAGCAACAGTGAAAGACTGTCCATTGTCTGAAAGCTTCCGAGACGAGGAAGAATCCAAGAAGTCTAGGGGGAAATACAGCCTCAGATCTACTCCTGGTAAAAATCAGAAAATACAGCCCGGGCAAAAACCGTTTACATGTAGTGAGTGTGGGAAAGGCTTTAGTCAGAGTGCAAATCTTGTTGTGCATCAACGAATCCACACTGGGGAGAAGCCCTTCGAGTGTCATGAGTGTGGGAAGGCCTTCATTCAAAGTGCAAACCTCGTTGTGCATCAGAGGATCCACACTGGACAGAAACCCTATGTCTGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057895-'1-3,'1-2,7-3=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.968 A=0.541 C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.0),PF134651=zf-H2C2_2=WD(100=6.3),PF134651=zf-H2C2_2=WD(100=6.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGAGACCATGGGCAGAGC
R:
GGGCTTCTCCGAGTCATCACT
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types