HsaEX6055408 @ hg19
Exon Skipping
Gene
ENSG00000196345 | ZNF167
Description
zinc finger protein 167 [Source:HGNC Symbol;Acc:12955]
Coordinates
chr3:44609404-44635665:+
Coord C1 exon
chr3:44609404-44609495
Coord A exon
chr3:44609799-44609925
Coord C2 exon
chr3:44635506-44635665
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTGGAGCTTGTCATTCCAGGAT
3' ss Score
3.29
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
CTCAATGTACTTCTCCAGTTCCTACCCTTCCTCAAGTGGGGAACTCAGGAGACCAAGCAGGGGCAACTGTACTTCGGATGGTCAGGCCCCAG
Seq A exon
GATACTGTGGCATATGAGGACCTATCTGTAGACTACACTCAGAAGAAATGGAAAAGTCTCACACTCAGTCAGAGAGCCCTGCAGTGGAACATGATGCCAGAAAATCACCATAGCATGGCCTCCTTGG
Seq C2 exon
ATGGTGAAACTGGGACTGAGGAGGAGTTAATTCCAAAGCATCATTCCTGAAAAATCAGAATCATACATACTTTCAAGAGAATTCCACAGAGACATTGCCCAGGAAGTCAAAATTTAGAAGGCTCCTCTGAAGGGAAAGAGAAGACTAGAGAGGACACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196345-'4-9,'4-5,5-9=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=0.471 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCTCCAGTTCCTACCCTTCC
R:
CCAGTGTCCTCTCTAGTCTTCTCT
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)