BtaEX0000135 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr22:16437103-16443904:+
Coord C1 exon
chr22:16437103-16437274
Coord A exon
chr22:16439129-16439252
Coord C2 exon
chr22:16441057-16443904
Length
124 bp
Sequences
Splice sites
3' ss Seq
GTAAAAGCTTGTCATTCCAGGAG
3' ss Score
2.94
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
GTTTCCACTCCAGGGCAGGAACAGGAGATACATTCTGAAGAGAAGACAGCCTTGGGTGCAACACATGAATCTCCTTCTACCTCACCCCACAGTGAGGGTTCAGCCCCTGGAGCCCACCTGGAGCCTCCTCGTGATCCTGGGGCACACCACCACCTCTCCAGTGAGCACTCTG
Seq A exon
GAGGCTGCAGAGTTGGAGTTCCTATCTGTGAACTATTCTCAGAAGTGGAAAGGTGCAGCACTCAGCCAGGGAGCCCTGTACCAGAACATCATGCTGGAAAACTGCCACAGCCTGGCCCCTTTGG
Seq C2 exon
CAGATGAGAACAGGATGGTGCATTCACAGTTGCCTCCAAAACAGGACATTTCTGAAGAATTGAAGTCATCTGACAGGATCTTAGGGGTGTTCTGTGGAGTGATTCCTGCAGGACAAGAAGCTGGGACTGCCAGTAAAGAGGCTTCAGAGAATCTAGAAGTTCAACCCTCAGATGAAGAAGGAACCAGACTGGACAGTGATTTCTTAGAAATAACACAGGAGGATAAAAAGAAATCCACAGAGGATCAATATGATGATTATAAGGAACTTGGGGGACATCTAGATCTGTCCTCTAGTCTCTCAGAACATCAGGGAGTTCTGAAGGGACAGAAATTGTATCACTGTGATGAATGTGATAAAGCTTTTAATCGGAGTTCACACCTCATTGGGCATCAGAGAATCCACACTGGAGAGAAACCATATGAGTGTTCTGAGTGTGGCAAGACCTTCAGGCAGACTTCTCAGCTCGTTGTCCACCTCAGAATCCATACAGGGGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003622_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.119 C2=NA
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(1.0=1.9)
A:
PF0135222=KRAB=WD(100=88.1)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGGGTGCAACACATGAA
R:
CAGTCCCAGCTTCTTGTCCTG
Band lengths:
253-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development