HsaEX6055408 @ hg38
Exon Skipping
Gene
ENSG00000196345 | ZKSCAN7
Description
zinc finger with KRAB and SCAN domains 7 [Source:HGNC Symbol;Acc:HGNC:12955]
Coordinates
chr3:44567912-44583445:+
Coord C1 exon
chr3:44567912-44568003
Coord A exon
chr3:44568307-44568433
Coord C2 exon
chr3:44582972-44583445
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATTGGAGCTTGTCATTCCAGGAT
3' ss Score
3.29
5' ss Seq
TGGGTAATG
5' ss Score
5.68
Exon sequences
Seq C1 exon
CTCAATGTACTTCTCCAGTTCCTACCCTTCCTCAAGTGGGGAACTCAGGAGACCAAGCAGGGGCAACTGTACTTCGGATGGTCAGGCCCCAG
Seq A exon
GATACTGTGGCATATGAGGACCTATCTGTAGACTACACTCAGAAGAAATGGAAAAGTCTCACACTCAGTCAGAGAGCCCTGCAGTGGAACATGATGCCAGAAAATCACCATAGCATGGCCTCCTTGG
Seq C2 exon
GCTGGAGTACAATGGCGTGATCTTGGCTCACTTCAATCTCCAGCTCCCGAGTTCAAGCGATTCTCCTGCCTCAGACTCCTGAGTAGCTGGGATTACAGGCGCCTGCCACCATGCCCAGCTAATTTTTGTAATATTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTTTCGAACTCCTGACCTCAGGTGATCCACCCGCCTCAGCCTCCCAAAGTGGTGGGATTACAGGCGTGAGCCACCACACCCAGCCTATTCTTTTTAAGTTTCTTGATGTAGTGGCAGTAGTCTTGTGCTCTTCAGGAGAGTGTCCCGAGTTCTACGTCCCACATCAACTGAGGGTGTGAACTTGTGGAGGACTTTTGTCTGAATCTCTTTTTCAATCTCTATACAATGTGGCGGAGTTGTGCCACCTACATGAGCCAATGGAGAAGAAAGCTCCTGGTATACTTTAAGTACTCAACAATATTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196345-'4-15,'4-9,5-15=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=0.441 C2=0.083
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGAACTCAGGAGACCAAG
R:
GTCAGGAGTTCGAAACCAGCC
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains