BtaINT0000675 @ bosTau6
Intron Retention
Description
NA
Coordinates
chr22:16437103-16438819:+
Coord C1 exon
chr22:16437103-16437262
Coord A exon
chr22:16437263-16438727
Coord C2 exon
chr22:16438728-16438819
Length
1465 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGC
5' ss Score
4.44
3' ss Seq
AGATTTCTTTCTTCCTTCAGCTC
3' ss Score
8.52
Exon sequences
Seq C1 exon
GTTTCCACTCCAGGGCAGGAACAGGAGATACATTCTGAAGAGAAGACAGCCTTGGGTGCAACACATGAATCTCCTTCTACCTCACCCCACAGTGAGGGTTCAGCCCCTGGAGCCCACCTGGAGCCTCCTCGTGATCCTGGGGCACACCACCACCTCTCCA
Seq A exon
GTGAGCACTCTGGTACTCACCTCCCTGGCTCTGGCCTTCAGTTATTCTTCCTTGCTCTCCTTTGGAGTCTTCCTTTCCCTCATCTCCCATCTCCCACCCCATTGGCCCCTTATCACCCTGCCCTGTGTCTTTCTTCCCTGGTGACTTCGTTCCTTTTGCTTATTCTCCAATCATTTATTTATTTAGTGCATTTTTATCAAGCATGTCTCATGCAAAGACACTGTTGAGGACCAGAGAGATGTACTACACCATGGATACTTATAAAGAGCTTGTTGTCTAGTTGCCAGAGGGTCAGTCCTAAGTGCAAGAAGGGGCAACCTCATAAGATATATCTGAGTGATATCAGTCCCCAGGCATTTGGGGCCATCACAGACGAGCCATGTGGGCATTGTAAACAGTGAGCAAAATCATTGTGGGTTAGGGTGGCTGGAGGATGTTTTGTGGCAGAGGGATTGAACAGTGAAAAATGGGGAAGGGATTAGAAGCGGGGAGAGAGGTGGTCGGTGCCAGAACAGAATGTAAAGCAAAGGCTCGCTAAGTTGGGAGTGCCCTTGGACCACACTGAGGTACGGTCAGGAGGGACTTATCTGGGAGCCTGAGCTGTGCTTGTGTAGGGCCTTTGGGTGGAACCCGGGAAGATTTGTGGGGTAGGTGAAGTGTTAGAAAACAGTATTCTGGAAGGATTACGTAGCACATGAGCACTGTGGATAGAGTGAGAAGCCCAGTGGCTGGGAGCCTTAGGAGGAGGCTAGTGTCACAAAACAGAAGTAATTGCCTGAGCGGATTTGGGTGGAATGAAAAGTGATAGATGTGACACACATTTGAAGGAAAAATCCACGAGACAATGCAGAGGAGGGGGGATTAGTAGGTTTTAGATGATGTTTGGAATCACTGAGGAAACTTGGGAAGTCAGGAGAGGAAGATGGAAACATGCATTTTAAACAGTGAACTTAAGGTCTTGTGGGACACCCAAATGAAATGTCCAGATAGGCAGCTGGAGGCTTGTGGTAGGGGTCTCAGAGAATGGAGAACTTCAGAGCAGCATTAGAGAATGGGAGCCATGAGATCTCTGACAGAGGGAAGAGGGTCACTCTGGGACCTAAGTGCCTTTAGTATCCTTGATGAATGGGCAAATGAAGAGAGGCCCCACAGCCTCTCACAGGCAGAGAGGTAGGGGGAGGGCAAGCAGGCTGCTGCTGGGGAAGCCACAGAGGAGAGAAGGTGGTCAGAAGTGTAGCTTCCTACCTAGTGTGGCAGAGAGAGGACTGGAAGGAGCTCTGTTTGACCAGGGACCTTCTGCATCTCCAGGGAAAGTTCACAGTTTACATGGATAACACCTTTATGGAATAGGTGTGAGGGTCAGTGTATGTGGAGCTGCTTGGGTTCTCTTGAATCCATTTACAGACCTCCTCATTGGAAACAAGAGCAGGGCTGGTCCCACTCAGAGATTTCTTTCTTCCTTCAG
Seq C2 exon
CTCAGAGTGCTTCCCCGGTGCCCACCCTTCCCCAAGTGGGGAACTTAAGAAACCAAGTAGTAGCAACTGTGCTTTCGATGGTCAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003622:ENSBTAT00000023585:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.581
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(1.0=1.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCACTCCAGGGCAGGAA
R:
CCTGACCATCGAAAGCACAGT
Band lengths:
246-1711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]