HsaINT0186289 @ hg19
Intron Retention
Gene
ENSG00000196345 | ZNF167
Description
zinc finger protein 167 [Source:HGNC Symbol;Acc:12955]
Coordinates
chr3:44606979-44609495:+
Coord C1 exon
chr3:44606979-44607147
Coord A exon
chr3:44607148-44609403
Coord C2 exon
chr3:44609404-44609495
Length
2256 bp
Sequences
Splice sites
5' ss Seq
TCGGTACTT
5' ss Score
5.17
3' ss Seq
AGCTTTCTTTCCTCCCTCAGCTC
3' ss Score
8.58
Exon sequences
Seq C1 exon
GTTTCAGCCCCAGCACAGAAACAGGAAATGCATTTTGAGGAGACAACAGCTCTGGGTACAACAAAGGAATCTCCTCCTACCTCACCCCTCAGTGGGGGCTCAGCCCCTGGAGCCCACCTGGAGCCTCCTTATGACCCAGGGACACACCACCTCCCCAGTGGGGACTTCG
Seq A exon
GTACTTATCTCCCCAGCTTTGGCCTTAAGTCATGCCTCCCTTCTCTCCTCTGGAGTCTCCTTTCCTTTATCTGCCCATCTCCTACTCCATGGAATCCCTCATTGCTCTGCTGTCTGTCCTTCTTCCCTAGTGACCCTGTTTGTTCCTTTTGCTTATTCTCTAATCATTCGTGTAGTTAGTAAGTTTTCATCAAGGGCATGTCGTAGGAAAGGCACTGCCAGAGACCAGAGAGATGTAGTACATCTATTGTCACTGATTTCAAAGAGCTTGTTATCTAGATGGTAGGATGAGTTAGTCATGTGTAAGAAGAGGCAACCTCATAAGATGCACATGAATGATATCTATCCTCAAGCATTTGATCCTGTCACAAATGAGCAATGTGGGCATTGGAAAAAGTGATCACTGGGTAAAAAGCAAGATCATTGTGGGCTGGAACTGGTAAGGGATGCTTCATGAAGGAGGTAGCAGAGTATTGGGCAGTAAAAATGTGGAAGAATTTTGAAGGGGAGAAAAAAGTAGCAGGCATGCCATTAGAAGACACAACAAAGACCCTAAGCTGGAGATTCCTTGAGCCCTGATTGAGGTGGAGTCAGGAAAGACTGTATTTGGGAACCTGGGCCTTGTTTGTACAGGACCTTGAGATTGAGGCAGGAAGATTTTGGGAGTCAGAGGATAATGTGTTAGAAATAGTATTTCAGGAGGATTACTCTGGCACAGGTGAGCATTATGGATTGAAGGGGAAGGCGCCTTAGTTAAAGGCTGGTGCGGTAGAATAGATGTGATTAATGCCTGAAGTGCAAAGAGAGGAACGGGCAAGGATAAAATTGAAAAATATTATCATGGAAACATCCGTGGGACTTGAGTTTGAAAGGGGAGGCAGGGGAATTAGAATGTTTTGGCCAATGATGGAATCATTGAGGGAAATTGAGAAATCTGAAAGAAAGGTGATAAGAACATTTTATTTATTTATTTAATGTTATTTATTTATTTTTTTTAAAGAGAGATAGGGTCTCACTCTGTCACCCAGGCTGGAGTGCAATGGCACGATCATAATAGCTCACTGTAGCCTTGAACTCCTGGGCTCAAGAAATCCTCCCACCATGGCCTCTTAGAACTACAGGCATGCCACCATGACCAGCTCTTTTTTTTTTTTTAACTTTTTATAGAAATGGGGTCTCCTACTGGGAGCAGTGGCACACACACCTGTAATCCCAGCACTTTGGGAGGCTAAGGCAGGTGGATCACTTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGATGAATCCCTTCCTACTAAAATACAAAAATTAGCCAGGCATAGTGGCAGGTACTTGTAATCCCAGCTACTCCAGAGGCTGAGGCATGAGAATTGCTTGAGCCTGGGAGGCAGAGGTTTCAGTGAGGCATGATCATGCCACTGCACTGCAGCAGAGTGAGACTCTGTCTCAAAACAAAAAGAGAGAGAGAGAGAGAAAGAGAAAGAAAGGAAAGAAAGAAAGAAAAAGAGAAGAGAAAAGAAAAGAGAGAAAAGAAAGAGAGGGAGGGAGGGAGCAAAAGAAAAGAAAGGAAAGGAAAAGAGGAGGGGAAGGGAAGGGAAGAGTGAAGGAAGGGAAGGAAGGAAAGGGAGAAAAAGACAACCTTATGTTGTACATGCTGGTCTTGAATTCCTAGCCTCAAGCCAGCCTCCCACCTTAGCCTAGAACATCCATCCATTCTAGACACTGAACTTAAAGTGTTGCAGGACACCCAAGTGAAATGTCCCATAGGCAATAGGAGGCATGTGGTAGGGGTCTAGGAGAGAAGTAAGAACTGTGAGAGCAGTATTAAAGCAATGAGAGTTGGTCAGATTGCTGACGGAAAGAACAAGGAAGCACTAGGGCCTGAGTTGCAAGGAGTGTCCATAATGAGAGGGCAGGAGCAGGCATGAGGAACCACAACTGTGAGGGGAAAATCAGGGCTGGCTGGTGCTAGGGAAACCATGGGAGAGAGAGTGGCCAGAATAGCTTCCCTGAAAAAAGTTGAAGAGAGTGAGGGCTTGGAGGAACACCCAGTTCTCAGCTTGATCCGGGACCTTGTACTGTACCCTCCAGGGAAAATTCACACCACTCTTGGGATAATGCCTTATGGAAGAGGTTAAGAGTCAGTGTGTGTGGAGGTGCCTGGGTTCTCTTGAATCCACTTATTGGGAATATAGATCTTATGGGAGCCAGAAGCAGGGCTTGTCCCACTCATAGCTTTCTTTCCTCCCTCAG
Seq C2 exon
CTCAATGTACTTCTCCAGTTCCTACCCTTCCTCAAGTGGGGAACTCAGGAGACCAAGCAGGGGCAACTGTACTTCGGATGGTCAGGCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196345-ZNF167:NM_018651:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.988 A=NA C2=0.973
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(1.0=1.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)