MmuINT0178662 @ mm9
Intron Retention
Gene
ENSMUSG00000063488 | Zfp167
Description
zinc finger protein 167 [Source:MGI Symbol;Acc:MGI:3040678]
Coordinates
chr9:122799777-122801509:+
Coord C1 exon
chr9:122799777-122799924
Coord A exon
chr9:122799925-122801435
Coord C2 exon
chr9:122801436-122801509
Length
1511 bp
Sequences
Splice sites
5' ss Seq
ACGGTACTC
5' ss Score
4.58
3' ss Seq
AGTTCACCTTTCACCCCCAGATC
3' ss Score
8.9
Exon sequences
Seq C1 exon
GTCTCACCTCCAGTACAAGAACAGGATGTGCATTTAAAGAAGATGGGAGCACTGAGTGCAGCTGAGCAGTCGCCTACCTCAACCTCCAATCAGGGCTTGGCCCCTGGTGCACTCTTAGATCCTCCCTGTGACCCAGGAGCTGGACACG
Seq A exon
GTACTCCTTCTCCTCAGTTCCATCCCCTAGAGTCACTTTCTTTCATCAGCCCAACTTGCACTGAAATCCCACATTGCCCCTACAGCCAGCCTCCTTCCTTAGCGACCCTTTTGTCTAGCCTCTAGCTGTGCATGCATGTACTTACCAAGTTTCCCTCAAGCCAGAGCAGTCTCCTACCTCAAGCATGTACCACTGTGTACCGCTGGGGACCAGAGACAGGCAGTATACTATGACTGTCTTTAAGAGTTCTTATGTAGATGGCAGGGAGTCAGTCATATACATAAAAAGAAGCAACCTCATAAGATATTTGGGTGAAGCTGGGCATGGTGGATCACACCTGTCATTCCAGTACTTCAAAAGCTAAGGCAAGAGAATTCCTGAGAGCTGAAGGCAAGCCTGAACTACTTTGTAAGTTTTGCACTAGCCTGTGCTTCAGATTAATACCCTGTGTGAAACAACAACATCAACAACACACATACACATACACACACACACACCAGCTACCACAAACAAAAGATACATCTGGATGGTATCTGTCTGTAGGCATAATACTGTCACTGTAAAAGGGGATTATTAGATAAAGTGCATTATGAGGCAGAGTAAGTATGGGGTTCTGGAGGAACAAGCAAGAGATTTAACCACTAAAAAGTGGAGAATGGAGGCTGGTTGCGGTGCTATATGCCTTTAATCCTAGCATTTAGGAGGCAGAAGCAGACAGATCTCTGTGAATTTGAGGTCAGCCTGATTAATATAACAAGCTCCAGGCCAGCCAGGGACACACAGTGAGACTCAGTTTTTAAAAACAACAACAGAGGAAGAGGGAGAGAGAAAGAATGAGAAAATGAGAATGAATTTGTTGTGATCAGGATGTAGGTATGTGGCAGGTCTGACAGAGCAGTGGGAACTGGGAGGTGTGACTAAAGCCGGGAAGATCAGAAGGGTCGCTGATGGAGGGAGACAGCACAGAGCTAGGTTCCAACAGTGTTCCAGATGGCAGGAGGCTGACTGAAGAGATGGCTGAGGAGTTAATGGCACTGGCTGCTCTTCCAGGCTCAATTTCCAGCACCTACATGGTGCTTCATCACCATCCATAATTCCAGTTTCATGGAATCCAACGCCACCTTCTGGTCTGCTACCAGACACACAGGTGATGCACAGTCAGATGTGCAGACAAAACACTCATACCCATTACAATAAAGAAGATATTTTAAAGGCAGGGGTGTACATCAGTGTTAGAAGTGTTAAGGAAATTAGGCAGAGAGAATATAGTTAGAAGTAGAGCTTCAGGCTGAAGAGGGTCTTGGAAGGAACCTCCAGTTCTGTTTGATAAATATTGCCTGTTGTATCCTCTGAAGAGCATTCCCAGCACACTTAGGATGAGGTCTCCAGGAGAAAGCTGAGAGTCGGTGTATGTGGAGTTCCCTGGATGCCTGCAGATCCCACCGTAGGCACGTGGATCTTAGGGAGCTGAGAGGGGGGCTTGACCCACTGAGTTCACCTTTCACCCCCAG
Seq C2 exon
ATCCTGCTTTTCCCAAAGTGGGGAACCCCAGAGCCCAGGCAGTGGCTACTGTGCTTAGGATGGCCAGGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063488-Zfp167:NM_001177505:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=NA C2=0.960
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(1.0=2.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCTCCAGTACAAGAACAGG
R:
CCTGGCCATCCTAAGCACAGT
Band lengths:
214-1725
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: