HsaALTA1000502-1/2 @ hg38
Alternative 3'ss
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:HGNC:12869]
Coordinates
chrX:24151691-24152830:+
Coord C1 exon
chrX:24151691-24151800
Coord A exon
NA
Coord C2 exon
chrX:24152720-24152830
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACGGTACTT
5' ss Score
6.66
3' ss Seq
GTGCTTTTATATTTTGACAGCTG
3' ss Score
7.93
Exon sequences
Seq C1 exon
GTTCTTGCTATATTGCCCCAGGCTGGTCTCGAACTCCTGGGCTCAAGCCGTTCTCCCGCCTCCCACTGCCCGCCTGTCACTGCCGTCTGTTCCCTGAGCTGTGCTTTACG
Seq A exon
NA
Seq C2 exon
CTGGGAAAGACATAGAAGAACTATTAAGAAGATAGAATTGTTTTGCTGCGCAGTACAGCAACAGTGGATGTTCAAGATTAAGATTAGAGTCAAGTTGTGTGATTAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889-7-13,7-12-1/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCACTGCCGTCTGTTCC
R:
ATCCACTGTTGCTGTACTGCG
Band lengths:
106-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains