HsaEX0072710 @ hg38
Exon Skipping
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:HGNC:12869]
Coordinates
chrX:24149745-24179770:+
Coord C1 exon
chrX:24149745-24149794
Coord A exon
chrX:24172715-24172800
Coord C2 exon
chrX:24179183-24179770
Length
86 bp
Sequences
Splice sites
3' ss Seq
TACTTTTTTCCCTGATTTAGGAG
3' ss Score
9.14
5' ss Seq
CAGGTATAA
5' ss Score
7.46
Exon sequences
Seq C1 exon
GCCGGCCTGCAGCACCCGCCACCGTCGCCGGCCGCCCGCACGTCCGTCCG
Seq A exon
GAGCTGTGACTGATGAGAATTAAAGGCCATGGATGAAGATGGGCTTGAATTACAACAAGAGCCAAACTCATTTTTTGATGCAACAG
Seq C2 exon
GAGCTGATGGTACACACATGGATGGTGATCAAATTGTTGTGGAAGTACAAGAAACTGTTTTTGTTTCAGATGTTGTGGATTCAGACATAACTGTGCATAACTTTGTTCCTGATGACCCAGATTCAGTTGTAATCCAAGATGTTATTGAGGACGTTGTTATAGAAGATGTTCAGTGCCCAGATATCATGGAAGAAGCAGATGTGTCTGAAACGGTCATCATTCCTGAGCAAGTGCTGGACTCAGATGTAACTGAAGAAGTTTCTTTAGCACATTGCACAGTCCCAGATGATGTTTTAGCTTCTGACATTACTTCAGCCTCAATGTCTATGCCAGAACACGTCTTGACGGGTGATTCTATACATGTGTCTGACGTTGGACATGTTGGACATGTTGGACATGTTGAACATGTGGTTCATGATAGTGTAGTGGAAGCAGAAATTGTCACTGATCCTCTGACTACCGACGTAGTTTCAGAAGAAGTATTGGTAGCAGACTGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889_MULTIEX1-8/16=2-12
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.900 C2=0.218
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF047048=Zfx_Zfy_act=PU(98.7=74.6),PF047048=Zfx_Zfy_act=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development