HsaEX0072713 @ hg38
Exon Skipping
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:HGNC:12869]
Coordinates
chrX:24175389-24179770:+
Coord C1 exon
chrX:24175389-24175443
Coord A exon
chrX:24177714-24177866
Coord C2 exon
chrX:24179183-24179770
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGATTTCTAAATTTCTATAGCCA
3' ss Score
5.61
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
TTTTTCAGAACACTTCCCATACATTCCCATTTGATCATCACCACAGTCCTGTGAG
Seq A exon
CCATAGATGGAGCATATTGGTGGTATATTGCACCAGAACAAAAAGGGAAGCGTGTGAAGGGAGAAAGGAAAAAAAATAGAAGTAAAAGAAACACATGGGAGAGATGGAAAGAAGAACAAATATGAGTTGAGGAGAGGGAGGTGGAGCAAAAAG
Seq C2 exon
GAGCTGATGGTACACACATGGATGGTGATCAAATTGTTGTGGAAGTACAAGAAACTGTTTTTGTTTCAGATGTTGTGGATTCAGACATAACTGTGCATAACTTTGTTCCTGATGACCCAGATTCAGTTGTAATCCAAGATGTTATTGAGGACGTTGTTATAGAAGATGTTCAGTGCCCAGATATCATGGAAGAAGCAGATGTGTCTGAAACGGTCATCATTCCTGAGCAAGTGCTGGACTCAGATGTAACTGAAGAAGTTTCTTTAGCACATTGCACAGTCCCAGATGATGTTTTAGCTTCTGACATTACTTCAGCCTCAATGTCTATGCCAGAACACGTCTTGACGGGTGATTCTATACATGTGTCTGACGTTGGACATGTTGGACATGTTGGACATGTTGAACATGTGGTTCATGATAGTGTAGTGGAAGCAGAAATTGTCACTGATCCTCTGACTACCGACGTAGTTTCAGAAGAAGTATTGGTAGCAGACTGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889_MULTIEX1-11/16=10-12
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.421 A=0.220 C2=0.218
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF047048=Zfx_Zfy_act=PU(98.7=74.6),PF047048=Zfx_Zfy_act=PU(0.1=0.0)
Main Inclusion Isoform:
ENST00000379177fB8009
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCATCACCACAGTCCTGT
R:
TGCTCAGGAATGATGACCGTT
Band lengths:
253-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development