HsaEX6051104 @ hg38
Exon Skipping
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:HGNC:12869]
Coordinates
chrX:24172715-24207475:+
Coord C1 exon
chrX:24172715-24172800
Coord A exon
chrX:24179183-24179770
Coord C2 exon
chrX:24207326-24207475
Length
588 bp
Sequences
Splice sites
3' ss Seq
ATTTTAATTTTTTTTTTAAGGAG
3' ss Score
8.66
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAGCTGTGACTGATGAGAATTAAAGGCCATGGATGAAGATGGGCTTGAATTACAACAAGAGCCAAACTCATTTTTTGATGCAACAG
Seq A exon
GAGCTGATGGTACACACATGGATGGTGATCAAATTGTTGTGGAAGTACAAGAAACTGTTTTTGTTTCAGATGTTGTGGATTCAGACATAACTGTGCATAACTTTGTTCCTGATGACCCAGATTCAGTTGTAATCCAAGATGTTATTGAGGACGTTGTTATAGAAGATGTTCAGTGCCCAGATATCATGGAAGAAGCAGATGTGTCTGAAACGGTCATCATTCCTGAGCAAGTGCTGGACTCAGATGTAACTGAAGAAGTTTCTTTAGCACATTGCACAGTCCCAGATGATGTTTTAGCTTCTGACATTACTTCAGCCTCAATGTCTATGCCAGAACACGTCTTGACGGGTGATTCTATACATGTGTCTGACGTTGGACATGTTGGACATGTTGGACATGTTGAACATGTGGTTCATGATAGTGTAGTGGAAGCAGAAATTGTCACTGATCCTCTGACTACCGACGTAGTTTCAGAAGAAGTATTGGTAGCAGACTGTGCCTCTGAAGCAGTCATAGATGCCAATGGGATCCCTGTGGACCAGCAGGATGATGACAAAGGCAACTGTGAGGACTACCTTATGATTTCCT
Seq C2 exon
TGGATGATGCTGGCAAAATAGAACACGATGGTTCTTCTGGAATGACCATGGACACAGAGTCGGAAATTGATCCTTGTAAAGTGGATGGCACTTGCCCTGAGGTCATCAAGGTGTACATTTTTAAAGCTGACCCTGGAGAAGATGACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889-'17-53,'17-47,32-53
Average complexity
C2
Mappability confidence:
91%=71=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=0.218 C2=0.466
Domain overlap (PFAM):
C1:
NO
A:
PF047048=Zfx_Zfy_act=PU(98.7=74.6),PF047048=Zfx_Zfy_act=PU(0.1=0.0)
C2:
PF047048=Zfx_Zfy_act=PU(19.9=97.3)
Main Skipping Isoform:
ENST00000379177fB8009
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGACTGATGAGAATTAAAGGC
R:
GTCATCTTCTCCAGGGTCAGC
Band lengths:
230-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains