RnoEX6025845 @ rn6
Exon Skipping
Gene
ENSRNOG00000005624 | Zfx
Description
zinc finger protein X-linked [Source:RGD Symbol;Acc:1562664]
Coordinates
chrX:63165943-63182385:-
Coord C1 exon
chrX:63182296-63182385
Coord A exon
chrX:63177769-63178338
Coord C2 exon
chrX:63165943-63166092
Length
570 bp
Sequences
Splice sites
3' ss Seq
TGAGTTCATTTATTTTTTAGGAG
3' ss Score
8.3
5' ss Seq
CTTGTAAGT
5' ss Score
8
Exon sequences
Seq C1 exon
GTGTTCTGGCTGATGAGAATTTAAAGGCCATGGATGAAGATGGACTTGAATTACAACCACAAGCACCAAACTCATTTTTTGATGCAACAG
Seq A exon
GAGCTGGTGCTACACACATGGATGGAAATCAAATTGTTGTGGAAGTACAAGAAACGGTTTATGTGTCAGATGTTGTGGATTCAGACATAACCGTTCATAACTACGTTCCCGATGACCCAGACTCAGTTGTAATCCAAGATGTTATTGAGGATGTTGTTATAGAAGATGTCCAATGTACAGATATCATGGACGAAGCAGATGTGTCCGAAACAGTCATCATCCCTGAACAAGTCCTGGATTCAGATGTAACCGAAGAAGTTTCTTTAACGCATTGCACAGTTCCAGATGATGTTTTAGCTTCCGATATTACTTCAGCCTCAATATCTATGCCTGAACATGTCTTGACAAGTGAATCTATACATGTGTCTGACGTTAGTCACGTTGAACATGTGGTTCATGATAGTGTAGTAGAAGCAGAAATCGTCACAGATCCTCTGACCGCTGATGTTGTTTCGGAAGAAGTGCTGGTAGCAGACTGTGCCTCTGAAGCAGTCATAGATGCCAACGGGGTCCCTGTGAACCAGCAGGATGAAGACAAAGCCAACTGTGAGGACTACCTTATGATCTCTT
Seq C2 exon
TGGATGATGCTGGTAAAATAGAACATGATGGTTCATCTGGACTGACTATGGACAACGAAACAGAAATTGATCCTTGTAAAGTGGATGGCACTTGCCCTGAAGTCATCAAGGTGTACATTTTTAAAGCTGATCCTGGAGAAGATGACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005624-'7-6,'7-5,10-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=0.139 C2=0.471
Domain overlap (PFAM):
C1:
NO
A:
PF047048=Zfx_Zfy_act=PU(98.6=73.8),PF047048=Zfx_Zfy_act=PU(0.1=0.0)
C2:
PF047048=Zfx_Zfy_act=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCTGGCTGATGAGAATTTAAAGGC
R:
CTAAGTCATCTTCTCCAGGATCAGC
Band lengths:
238-808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]