GgaEX6004719 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr1:121647514-121656312:-
Coord C1 exon
chr1:121656242-121656312
Coord A exon
chr1:121655215-121655781
Coord C2 exon
chr1:121647514-121647663
Length
567 bp
Sequences
Splice sites
3' ss Seq
ATTTTAATTGTATTTTTCAGGAG
3' ss Score
9.46
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
GTTAAAGGCCATGGATGAAGATGGGCTTGAATTGCAGCCACATGAGCCAAATGCATTTTTTGATCCAACAG
Seq A exon
GAGCTGATGCCACACATATGGATGGAGATCAGATTGTTGTGGAAGTACAGGAAACAGTATTTGTTTCAGATGTAGTCGACTCAGATATAACTGTGCATAATTTTGTTCCTGACGATCCAGATTCTGTAGTAATCCAAGATGTCATTGAGGATGTTGTTATTGAGGATGTTCAGTGCCCAGATATTATGGAGGAGCCAGACGTATCTGAAACTGTCATTATTCCTGAACAAGTGCTGGACACAGACGTGGCTGAAGAGGTTTCTTTGGCTCATTGCACTGTCCCAGATGATGTTTTGGCTTCAGACATAACAGCAGAAGCAATGTCTATACCAGAACATGTACTGACGAGCGAGTCAATGCATGTACCTGAAGTTGGACATGTAGAACATGTAGTTCATGATAATGTTGAAGAAGCAGATATTGTCACTGATACTCTGGGAACAGATGTTGTTTCTGAAGAGGTCTTGGTGGCAGACTGCGCATCGGAAGCAGTGATCGATGCCAATGGGATCCCTGTGGAACATCAAGACGAGAAGGGCAACTGTGAAGATTACCTGATGATTTCTC
Seq C2 exon
TGGATGATGCTGGTAAGATAGAACATGAAGGTTCTGCTGAAATTACCATGGAAGCAGAGTCAGAAAGTGGATCTTGTAAAGTGGATGGCATTTGTCCAGAAGTCATCAAGGTCTATATATTCAAAGCAGACCCTGGAGAAGATGATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016327-'0-5,'0-2,3-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.326 C2=0.373
Domain overlap (PFAM):
C1:
NO
A:
PF047048=Zfx_Zfy_act=PU(42.6=73.7)
C2:
PF047048=Zfx_Zfy_act=FE(15.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGCCATGGATGAAGATGGG
R:
ATCATCTTCTCCAGGGTCTGCT
Band lengths:
214-781
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]