DreEX0086453 @ danRer10
Exon Skipping
Gene
ENSDARG00000074453 | zfx
Description
zinc finger protein, X-linked [Source:ZFIN;Acc:ZDB-GENE-061220-2]
Coordinates
chr24:16862988-16867507:+
Coord C1 exon
chr24:16862988-16863086
Coord A exon
chr24:16866449-16866790
Coord C2 exon
chr24:16867355-16867507
Length
342 bp
Sequences
Splice sites
3' ss Seq
GTAACTTCTTTTTTGAGAAGAGT
3' ss Score
-0.45
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
ATCCTATATTATGCAGATGAACGGTGAAGACAATGGATGAAGATGTAACTGTTCTCTCTCTTCATTCCCATGAGCCTAAGATCATATTCCACGGCACAG
Seq A exon
AGTGTGATGGAGAAGAAGACGAGGTGGTGGTGGAGCTGCAGGAGTCAGTGCTGGTGTCTGATGTGGAGGGTGAGAAGATCGCGGTGCACGGTCTCACTCATGAGGAGCTGGTCATCCAGGAGGCCATCGAGGATGTGGTGGCGGAGTATGTGCCTTGCACTGATGAAGAGGACGATGTTGATGATGACGATGATGAAGGGCTTGGCACCATTGCCGTGGAGACCTGTGTGATGTCACCTGATGATGTGGCTCTGGAGGATGAAGGGCTGCAGGTGGATGTGGTGACCGACGCTCAGGTACAAGAGGATCCAGACACCTGCGGAGACTATCTGATGATCTCCT
Seq C2 exon
TGGATGAAGCTGGAAAGGTGGTGTCTGATGAAGATGCTAAGGTCACCATTGAGGGCACTTTAGAGGATTCAGAAGATGTGGAGAAGGATGATGATGGTCAAGAGGTCATCAAAGTGTACATCATCAAGGCTCACCCAGGGGAGGATGACTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074453_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.560 C2=0.481
Domain overlap (PFAM):
C1:
PF047048=Zfx_Zfy_act=PU(2.8=39.1)
A:
PF047048=Zfx_Zfy_act=PU(37.4=99.1)
C2:
PF047048=Zfx_Zfy_act=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTATGCAGATGAACGGTGAAGACA
R:
CCAAGTCATCCTCCCCTGGG
Band lengths:
246-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]