HsaEX6051104 @ hg19
Exon Skipping
Gene
ENSG00000005889 | ZFX
Description
zinc finger protein, X-linked [Source:HGNC Symbol;Acc:12869]
Coordinates
chrX:24190832-24225592:+
Coord C1 exon
chrX:24190832-24190917
Coord A exon
chrX:24197300-24197887
Coord C2 exon
chrX:24225443-24225592
Length
588 bp
Sequences
Splice sites
3' ss Seq
ATTTTAATTTTTTTTTTAAGGAG
3' ss Score
8.66
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GAGCTGTGACTGATGAGAATTAAAGGCCATGGATGAAGATGGGCTTGAATTACAACAAGAGCCAAACTCATTTTTTGATGCAACAG
Seq A exon
GAGCTGATGGTACACACATGGATGGTGATCAAATTGTTGTGGAAGTACAAGAAACTGTTTTTGTTTCAGATGTTGTGGATTCAGACATAACTGTGCATAACTTTGTTCCTGATGACCCAGATTCAGTTGTAATCCAAGATGTTATTGAGGACGTTGTTATAGAAGATGTTCAGTGCCCAGATATCATGGAAGAAGCAGATGTGTCTGAAACGGTCATCATTCCTGAGCAAGTGCTGGACTCAGATGTAACTGAAGAAGTTTCTTTAGCACATTGCACAGTCCCAGATGATGTTTTAGCTTCTGACATTACTTCAGCCTCAATGTCTATGCCAGAACACGTCTTGACGGGTGATTCTATACATGTGTCTGACGTTGGACATGTTGGACATGTTGGACATGTTGAACATGTGGTTCATGATAGTGTAGTGGAAGCAGAAATTGTCACTGATCCTCTGACTACCGACGTAGTTTCAGAAGAAGTATTGGTAGCAGACTGTGCCTCTGAAGCAGTCATAGATGCCAATGGGATCCCTGTGGACCAGCAGGATGATGACAAAGGCAACTGTGAGGACTACCTTATGATTTCCT
Seq C2 exon
TGGATGATGCTGGCAAAATAGAACACGATGGTTCTTCTGGAATGACCATGGACACAGAGTCGGAAATTGATCCTTGTAAAGTGGATGGCACTTGCCCTGAGGTCATCAAGGTGTACATTTTTAAAGCTGACCCTGGAGAAGATGACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005889-'8-21,'8-20,17-21=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.928 A=0.214 C2=0.471
Domain overlap (PFAM):
C1:
NO
A:
PF047048=Zfx_Zfy_act=PU(98.7=74.6),PF047048=Zfx_Zfy_act=PU(0.1=0.0)
C2:
PF047048=Zfx_Zfy_act=PU(19.9=97.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTGACTGATGAGAATTAAAGGC
R:
GTCATCTTCTCCAGGGTCAGC
Band lengths:
230-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)