BtaEX0040958 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007730 | ZFX
Description
Bos taurus zinc finger protein, X-linked (ZFX), mRNA. [Source:RefSeq mRNA;Acc:NM_177490]
Coordinates
chrX:126152630-126168149:-
Coord C1 exon
chrX:126168064-126168149
Coord A exon
chrX:126164303-126164872
Coord C2 exon
chrX:126152630-126152779
Length
570 bp
Sequences
Splice sites
3' ss Seq
TTAATTTTTGTTTTTTTAAGGAG
3' ss Score
8.95
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CTGTGACTGATGAAAATTAAAGGCCATGGATGAAGATGGACTTGAATTACAACCACAAGAACCAAACTCATTTTTTGATACAACAG
Seq A exon
GAGCTGATGCTACACACATGGATGGTGATCAAATTGTTGTGGAAGTACAAGAAACTGTTTTTGTTTCAGATGTTGTGGATTCAGACATAACTGTGCATAACTTTGTTCCCGATGACCCAGACTCAGTTGTAATCCAAGATGTTATCGAGGACGTTGTTATAGAAGATGTTCAGTGTCCAGATATCATGGAAGAAGCAGATGTATCTGAAACAGTCATCATTCCTGAGCAAGTGCTGGACTCAGATGTAACAGAAGAAGTGTCTTTAGCACATTGTACAGTCCCAGATGACGTCTTAGCTTCTGATATTACTTCAGCCTCAATGTCTATGCCAGAACACGTCTTGACGAGTGAGTCCATACACGTGTCTGACATTGGACACGTTGAACACGTTGTTCATGATAGCGTAGTAGAGGCAGAAATCGTCACTGATCCTCTGACAGCCGATGTAGTGTCAGAAGAAGTATTGGTAGCAGATTGTGCCTCAGAAGCAGTCATAGATGCCAACGGGATCCCTGTGGACCAGCAGGAGGATGACAAAGGCAACTGTGAGGACTACCTTATGATTTCCT
Seq C2 exon
TGGATGATGCTGGCAAAATAGAACACGATGGTTCCTCTGGAATGACCATGGATGCAGAGTCAGAGATCGATCCTTGTAAAGTAGATGGCACTTGCCCTGAAGTTATCAAGGTGTACATTTTTAAAGCTGATCCTGGAGAGGATGACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007730-'0-5,'0-1,3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.984 A=0.234 C2=0.451
Domain overlap (PFAM):
C1:
NO
A:
PF047048=Zfx_Zfy_act=PU(42.0=73.8)
C2:
PF047048=Zfx_Zfy_act=FE(14.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGACTGATGAAAATTAAAGGCCA
R:
TCCTCTCCAGGATCAGCTTTA
Band lengths:
227-797
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development